CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98294
KRH06045
KRH09922
KRH23409
KRH26285
KRH30354

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26550.1	KRH06045	AT3G11730.1	21798944
AT4G26550.1	KRH26285	AT3G11730.1	21798944
AT4G26550.1	KRG98294	AT5G58750.1	21798944
AT4G26550.1	KRH30354	AT5G58750.1	21798944
AT5G56020.1	KRH09922	AT3G16310.1	21798944
AT5G56020.1	KRH23409	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46429	Soybean	plasma membrane	97.27	97.27
AT4G26550.1	Thale cress	plasma membrane	75.45	73.78
CDX92816	Canola	plasma membrane	76.82	72.84
VIT_19s0015g01110.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	76.36	72.41
CDX89326	Canola	cytosol, peroxisome, plasma membrane	74.09	72.12
CDX94317	Canola	cytosol, peroxisome, plasma membrane	74.09	72.12
CDY42730	Canola	plasma membrane	76.36	72.1
PGSC0003DMT400057335	Potato	plasma membrane	76.36	72.1
EER88631	Sorghum	plastid	73.64	72.0
Bra026423.1-P	Field mustard	plasma membrane	73.64	71.68
Solyc07g065850.2.1	Tomato	plasma membrane	75.91	71.67
GSMUA_Achr7P06090_001	Banana	cytosol, peroxisome, plastid	73.64	71.37
GSMUA_Achr3P04250_001	Banana	plasma membrane	74.55	71.3
Os06t0608600-01	Rice	plasma membrane	72.27	68.83
TraesCS7D01G377300.1	Wheat	plasma membrane, plastid	70.91	68.72
AT5G56020.1	Thale cress	plasma membrane	71.36	68.26
Os06t0300300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane, plastid	70.45	67.98
TraesCS7A01G220800.1	Wheat	plastid	70.0	67.84
TraesCS7A01G381000.1	Wheat	plastid	70.45	67.69
TraesCS7B01G126600.1	Wheat	plasma membrane, plastid	69.09	66.96
TraesCS7D01G221300.1	Wheat	golgi	69.09	66.96
EER97654	Sorghum	plasma membrane, plastid	69.09	66.67
TraesCS7B01G282900.1	Wheat	plastid	65.91	63.88
Zm00001d007053_P001	Maize	plasma membrane	69.09	54.29
CDY06543	Canola	endoplasmic reticulum, plasma membrane, vacuole	30.45	45.27
Bra019100.1-P	Field mustard	cytosol	72.73	35.4

Protein Annotations

EntrezGene:100805914	MapMan:35.2	EMBL:ACUP02010889	EnsemblPlantsGene:GLYMA_18G073700	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	UniProt:I1N075
EnsemblPlants:KRG98435	ProteinID:KRG98435	ProteinID:KRG98435.1	PFAM:PF04178	PANTHER:PTHR23137	PANTHER:PTHR23137:SF10
TMHMM:TMhelix	UniParc:UPI000233F3DD	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:-:7012070..7018788

Molecular Weight (calculated)

23670.7 Da

IEP (calculated)

7.337

GRAVY (calculated)

0.560

Length

220 amino acids

Sequence
(BLAST)

001: MQGWFSGQSS EEEAKPASSL LADWNSYASA QSSEDSSAFP FDIESAVRSA NDTVSGTFSV VSKGVRDLPG NFQSATSNVP SGKALVYFGL FLASGVFFVF
101: IAFTLFLPIM VVMPQKFALC FTLGCGFIIG SFFALKGPKN QLAHMLSMER LPFTLAFLGS MIGTIYVSMV LHSYILSVVF SVVQVLSLGY YSISYFPGGS
201: AGMKFLTSAF TSSIMKCFGQ

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.