Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G56020.1 | CDY36586 | AT1G15760.1 | 21798944 |
| AT5G56020.1 | CDY61373 | AT1G15760.1 | 21798944 |
| AT5G56020.1 | CDX97739 | AT3G16310.1 | 21798944 |
| AT5G56020.1 | CDY30157 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G56020.1 | Thale cress | plasma membrane | 50.0 | 32.17 |
| CDX89326 | Canola | cytosol, peroxisome, plasma membrane | 48.65 | 31.86 |
| CDX94317 | Canola | cytosol, peroxisome, plasma membrane | 48.65 | 31.86 |
| CDX92816 | Canola | plasma membrane | 48.65 | 31.03 |
| KRH46429 | Soybean | plasma membrane | 45.95 | 30.91 |
| CDY42730 | Canola | plasma membrane | 48.65 | 30.9 |
| KRG98435 | Soybean | plasma membrane | 45.27 | 30.45 |
| GSMUA_Achr7P06090_001 | Banana | cytosol, peroxisome, plastid | 46.62 | 30.4 |
| EER88631 | Sorghum | plastid | 43.92 | 28.89 |
| VIT_19s0015g01110.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 44.59 | 28.45 |
| TraesCS7B01G282900.1 | Wheat | plastid | 41.89 | 27.31 |
| TraesCS7D01G221300.1 | Wheat | golgi | 41.89 | 27.31 |
| TraesCS7D01G377300.1 | Wheat | plasma membrane, plastid | 41.89 | 27.31 |
| Os06t0608600-01 | Rice | plasma membrane | 42.57 | 27.27 |
| PGSC0003DMT400057335 | Potato | plasma membrane | 42.57 | 27.04 |
| Solyc07g065850.2.1 | Tomato | plasma membrane | 42.57 | 27.04 |
| TraesCS7A01G220800.1 | Wheat | plastid | 41.22 | 26.87 |
| TraesCS7B01G126600.1 | Wheat | plasma membrane, plastid | 41.22 | 26.87 |
| TraesCS7A01G381000.1 | Wheat | plastid | 41.22 | 26.64 |
| GSMUA_Achr3P04250_001 | Banana | plasma membrane | 41.22 | 26.52 |
| Os06t0300300-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane, plastid | 40.54 | 26.32 |
| EER97654 | Sorghum | plasma membrane, plastid | 39.86 | 25.88 |
| Zm00001d007053_P001 | Maize | plasma membrane | 39.86 | 21.07 |
Protein Annotations
| EnsemblPlants:CDY06543 | EnsemblPlantsGene:GSBRNA2T00122663001 | GO:A0A078F4D7 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_SFT2 | PANTHER:PTHR23137 | PANTHER:PTHR23137:SF10 |
| ProteinID:CDY06543 | ProteinID:CDY06543.1 | TMHMM:TMhelix | UniParc:UPI0004EE4943 | MapMan:35.2 | : |
Description
BnaC02g12670D
Coordinates
chrLK031971:-:240779..243671
Molecular Weight (calculated)
16621.3 Da
IEP (calculated)
9.251
GRAVY (calculated)
1.045
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSGKALIKP LELLSMYFGL ILPIGVFFVF IAFTMFLPVT VLMPQKLAIC FTLKCGFIVE SFLSLSLVIQ LTIPNSNLSS NMPLLTLNMQ ICNVCISYPV
101: HSQILKIYKT LVYCAGLLLL YISYFPDRSS GMKFLSFALT FSVFRMFG
101: HSQILKIYKT LVYCAGLLLL YISYFPDRSS GMKFLSFALT FSVFRMFG
001: MEKMAKGWFP MSGTSSSGDQ QQQPLQTGGT SLLADWNSYA ASRDFEEDTG TLGFDIESAV RSANDTVSGT FNVVSKGVRD NLQSATSSMP SGKALMYFGL
101: LLASGVFFIF IAFTMFLPVM VLMPQKFAIC FTLGCGFIIG SFFALRGPQN QLAHMSSAER LPLTLGFIAT MVGTIYVSMV LHSYILSVIF SALQVIALAY
201: YCISYFPGGS SGMKFLSSTL TSSVFRMFGR
101: LLASGVFFIF IAFTMFLPVM VLMPQKFAIC FTLGCGFIIG SFFALRGPQN QLAHMSSAER LPLTLGFIAT MVGTIYVSMV LHSYILSVIF SALQVIALAY
201: YCISYFPGGS SGMKFLSSTL TSSVFRMFGR
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:Q9FKU4]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.