Factsheet for GSMUA_Achr3P04250_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P09970_001
GSMUA_Achr4P08270_001
GSMUA_Achr4P09380_001
GSMUA_Achr4P15460_001
GSMUA_Achr5P28860_001
GSMUA_Achr6P14800_001
GSMUA_Achr6P17450_001
GSMUA_Achr8P14710_001
GSMUA_Achr8P17040_001
GSMUA_Achr8P25150_001
GSMUA_Achr9P26950_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26550.1	GSMUA_Achr10P...	AT3G11730.1	21798944
AT4G26550.1	GSMUA_Achr6P17450_001	AT3G11730.1	21798944
AT4G26550.1	GSMUA_Achr5P28860_001	AT5G58750.1	21798944
AT5G56020.1	GSMUA_Achr1P09970_001	AT1G15760.1	21798944
AT5G56020.1	GSMUA_Achr4P09380_001	AT1G15760.1	21798944
AT5G56020.1	GSMUA_Achr8P14710_001	AT1G15760.1	21798944
AT5G56020.1	GSMUA_Achr8P17040_001	AT1G15760.1	21798944
AT5G56020.1	GSMUA_Achr8P25150_001	AT1G15760.1	21798944
AT5G56020.1	GSMUA_Achr9P26950_001	AT1G15760.1	21798944
AT5G56020.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT5G56020.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT5G56020.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P06090_001	Banana	cytosol, peroxisome, plastid	76.96	77.97
AT4G26550.1	Thale cress	plasma membrane	74.78	76.44
KRG98435	Soybean	plasma membrane	71.3	74.55
VIT_19s0015g01110.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	74.78	74.14
KRH46429	Soybean	plasma membrane	70.43	73.64
CDX89326	Canola	cytosol, peroxisome, plasma membrane	72.17	73.45
CDX94317	Canola	cytosol, peroxisome, plasma membrane	72.17	73.45
Bra026423.1-P	Field mustard	plasma membrane	71.74	73.01
CDX92816	Canola	plasma membrane	73.04	72.41
CDY42730	Canola	plasma membrane	72.61	71.67
EER88631	Sorghum	plastid	69.13	70.67
AT5G56020.1	Thale cress	plasma membrane	69.57	69.57
PGSC0003DMT400057335	Potato	plasma membrane	70.43	69.53
Solyc07g065850.2.1	Tomato	plasma membrane	70.0	69.1
TraesCS7A01G220800.1	Wheat	plastid	67.83	68.72
TraesCS7B01G126600.1	Wheat	plasma membrane, plastid	67.83	68.72
TraesCS7D01G221300.1	Wheat	golgi	67.83	68.72
TraesCS7D01G377300.1	Wheat	plasma membrane, plastid	67.83	68.72
EER97654	Sorghum	plasma membrane, plastid	67.83	68.42
Os06t0300300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane, plastid	67.83	68.42
TraesCS7A01G381000.1	Wheat	plastid	66.96	67.25
Os06t0608600-01	Rice	plasma membrane	66.96	66.67
TraesCS7B01G282900.1	Wheat	plastid	62.61	63.44
Zm00001d007053_P001	Maize	plasma membrane	67.83	55.71
CDY06543	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.52	41.22
Bra019100.1-P	Field mustard	cytosol	68.7	34.96

Protein Annotations

EnsemblPlants:GSMUA_Achr3P04250_001	EnsemblPlants:GSMUA_Achr3T04250_001	EnsemblPlantsGene:GSMUA_Achr3G04250_001	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2
PANTHER:PTHR23137	PANTHER:PTHR23137:SF10	PFAM:PF04178	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002956C90
UniProt:M0SBP3	MapMan:35.2	:	:	:	:

Description

Putative Protein transport protein SFT2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G04250_001]

Coordinates

chr3:-:2706340..2710319

Molecular Weight (calculated)

24442.8 Da

IEP (calculated)

9.116

GRAVY (calculated)

0.554

Length

230 amino acids

Sequence
(BLAST)

001: MRTAQAWFTG GPSGGGGGEQ QKPSSSSLLA DWNSYAASRS TEEGGASAFG FDIESAVQSA NDKVTGTFNV VSKGMTELPG IFQSATSSVP SGKSLMYFGL
101: LLASGVFFIV VAFTMFLPVM VLMPQKFALC FTLGCALIIG SFFALKGPKN QLAHMFSMER LPFTLVFIGS MVGTIYVSMV LHSYILSVLF SVIQVVALSY
201: YSVSYFPGGS TGLRFLSSSI TSSILKCFGR

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.