Factsheet for PGSC0003DMT400057335

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400064019

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26550.1	PGSC0003DMT400064019	AT3G11730.1	21798944
AT5G56020.1	PGSC0003DMT400006495	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065850.2.1	Tomato	plasma membrane	99.57	99.57
KRG98435	Soybean	plasma membrane	72.1	76.36
KRH46429	Soybean	plasma membrane	71.67	75.91
VIT_19s0015g01110.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	73.82	74.14
AT4G26550.1	Thale cress	plasma membrane	70.82	73.33
Bra026423.1-P	Field mustard	plasma membrane	69.53	71.68
CDX89326	Canola	cytosol, peroxisome, plasma membrane	69.53	71.68
CDX94317	Canola	cytosol, peroxisome, plasma membrane	69.53	71.68
EER88631	Sorghum	plastid	69.1	71.56
GSMUA_Achr7P06090_001	Banana	cytosol, peroxisome, plastid	69.53	71.37
CDX92816	Canola	plasma membrane	70.39	70.69
GSMUA_Achr3P04250_001	Banana	plasma membrane	69.53	70.43
CDY42730	Canola	plasma membrane	70.39	70.39
TraesCS7B01G126600.1	Wheat	plasma membrane, plastid	67.38	69.16
PGSC0003DMT400074185	Potato	cytosol, endoplasmic reticulum, peroxisome	66.09	68.75
TraesCS7D01G221300.1	Wheat	golgi	66.52	68.28
TraesCS7A01G220800.1	Wheat	plastid	66.52	68.28
AT5G56020.1	Thale cress	plasma membrane	67.38	68.26
Os06t0300300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane, plastid	66.52	67.98
TraesCS7D01G377300.1	Wheat	plasma membrane, plastid	66.09	67.84
Os06t0608600-01	Rice	plasma membrane	66.52	67.1
EER97654	Sorghum	plasma membrane, plastid	65.24	66.67
TraesCS7A01G381000.1	Wheat	plastid	65.24	66.38
TraesCS7B01G282900.1	Wheat	plastid	60.94	62.56
Zm00001d007053_P001	Maize	plasma membrane	65.24	54.29
CDY06543	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.04	42.57
Bra019100.1-P	Field mustard	cytosol	66.52	34.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400057335	EnsemblPlantsGene:PGSC0003DMG400022265	EntrezGene:102603489	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2
PANTHER:PTHR23137	PANTHER:PTHR23137:SF10	PFAM:PF04178	PGSC:PGSC0003DMG400022265	RefSeq:XP_006346109.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000294BFAB	UniProt:M1C0V8	MapMan:35.2	:	:

Description

Protein transport protein SFT2 [Source:PGSC_GENE;Acc:PGSC0003DMG400022265]

Coordinates

chr7:+:55841773..55845394

Molecular Weight (calculated)

25082.4 Da

IEP (calculated)

8.777

GRAVY (calculated)

0.502

Length

233 amino acids

Sequence
(BLAST)

001: MQKWFSAGSG GGDDRYVEQQ QASSSTPSLL ADWNSYASAK SSEESSSTAF IGSFDLESAV RSANDTVSGT FNVVSKGVRD IPGNLQSATS NIPSGKALMY
101: FGLFMATGVF FIFMAFTLFL PVIVLVPQKF AICFTLGCSF IIGSFFALKG PKTQFAHMFS MERLPFTLGF MGSMIGTLYV SMALHSYILS VLFSVIQVLA
201: LAYYAISYFP GGSAGLKFLS SSMISSVLKC FGR

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.