Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g103370.2.1 | |
| Solyc03g120880.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26550.1 | Solyc01g103370.2.1 | AT3G11730.1 | 21798944 |
| AT5G56020.1 | Solyc03g120880.2.1 | AT3G16310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400057335 | Potato | plasma membrane | 99.57 | 99.57 |
| KRG98435 | Soybean | plasma membrane | 71.67 | 75.91 |
| KRH46429 | Soybean | plasma membrane | 71.24 | 75.45 |
| VIT_19s0015g01110.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 73.39 | 73.71 |
| AT4G26550.1 | Thale cress | plasma membrane | 70.39 | 72.89 |
| Bra026423.1-P | Field mustard | plasma membrane | 69.1 | 71.24 |
| CDX89326 | Canola | cytosol, peroxisome, plasma membrane | 69.1 | 71.24 |
| CDX94317 | Canola | cytosol, peroxisome, plasma membrane | 69.1 | 71.24 |
| EER88631 | Sorghum | plastid | 68.67 | 71.11 |
| GSMUA_Achr7P06090_001 | Banana | cytosol, peroxisome, plastid | 69.1 | 70.93 |
| CDX92816 | Canola | plasma membrane | 69.96 | 70.26 |
| GSMUA_Achr3P04250_001 | Banana | plasma membrane | 69.1 | 70.0 |
| CDY42730 | Canola | plasma membrane | 69.96 | 69.96 |
| Solyc12g006250.1.1 | Tomato | plasma membrane | 66.95 | 69.64 |
| TraesCS7B01G126600.1 | Wheat | plasma membrane, plastid | 67.38 | 69.16 |
| TraesCS7D01G221300.1 | Wheat | golgi | 66.52 | 68.28 |
| TraesCS7A01G220800.1 | Wheat | plastid | 66.52 | 68.28 |
| Os06t0300300-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane, plastid | 66.52 | 67.98 |
| AT5G56020.1 | Thale cress | plasma membrane | 66.95 | 67.83 |
| TraesCS7D01G377300.1 | Wheat | plasma membrane, plastid | 65.67 | 67.4 |
| Os06t0608600-01 | Rice | plasma membrane | 66.09 | 66.67 |
| EER97654 | Sorghum | plasma membrane, plastid | 65.24 | 66.67 |
| TraesCS7A01G381000.1 | Wheat | plastid | 64.81 | 65.94 |
| TraesCS7B01G282900.1 | Wheat | plastid | 60.52 | 62.11 |
| Zm00001d007053_P001 | Maize | plasma membrane | 65.24 | 54.29 |
| CDY06543 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 27.04 | 42.57 |
| Bra019100.1-P | Field mustard | cytosol | 66.09 | 34.07 |
Protein Annotations
| EnsemblPlants:Solyc07g065850.2.1 | EnsemblPlantsGene:Solyc07g065850.2 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | PANTHER:PTHR23137 |
| PANTHER:PTHR23137:SF10 | PFAM:PF04178 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000276B077 | UniProt:K4CHR1 |
| MapMan:35.2 | : | : | : | : | : |
Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:K4CHR1]
Coordinates
chr7:+:67447088..67450934
Molecular Weight (calculated)
25068.4 Da
IEP (calculated)
8.777
GRAVY (calculated)
0.502
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MQKWFSAGSG GGDDRYVEQQ QASSSTPSLL ADWNSYASAK SSDESSSTAF IGSFDLESAV RSANDTVSGT FNVVSKGVRD IPGNLQSATS NIPSGKALMY
101: FGLFMATGVF FIFMAFTLFL PVIVLVPQKF AICFTLGCSF IIGSFFALKG PKTQFAHMFS MERLPFTLGF MGSMIGTLYV SMALHSYILS VLFSVIQVLA
201: LAYYAISYFP GGSAGLKFLS SSMISSVLKC FGR
101: FGLFMATGVF FIFMAFTLFL PVIVLVPQKF AICFTLGCSF IIGSFFALKG PKTQFAHMFS MERLPFTLGF MGSMIGTLYV SMALHSYILS VLFSVIQVLA
201: LAYYAISYFP GGSAGLKFLS SSMISSVLKC FGR
001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.