Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074185 | Potato | cytosol, endoplasmic reticulum, peroxisome | 96.88 | 96.88 |
| VIT_12s0057g01380.t01 | Wine grape | plastid | 80.8 | 80.44 |
| Solyc07g065850.2.1 | Tomato | plasma membrane | 69.64 | 66.95 |
Protein Annotations
| EnsemblPlants:Solyc12g006250.1.1 | EnsemblPlantsGene:Solyc12g006250.1 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | PANTHER:PTHR23137 |
| PANTHER:PTHR23137:SF10 | PFAM:PF04178 | TMHMM:TMhelix | UniParc:UPI000276A7B1 | UniProt:K4DBG2 | MapMan:35.2 |
Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:K4DBG2]
Coordinates
chr12:+:767893..772131
Molecular Weight (calculated)
24312.6 Da
IEP (calculated)
9.607
GRAVY (calculated)
0.475
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MHKTAQSWFT GGPSNDLQKT PSSLLADWNA YASTQDEGSS SDLGFDLEAA VRTANDKVSG TFNVVTKGVK NLPGSFQSAT SNVPSGKSLM YFGLFLAAGV
101: FFIFIAFTMF LPVMVLMPQK FAICFTIGCA FIIGSFFALK GPKNQLTHMT SKERLPFTAL FIGSMVGTIY VSMVLHSYIL SVLFSVIQVL ALSYYVISYF
201: PGGSAGMRFL SSTLTSSIFR CFGR
101: FFIFIAFTMF LPVMVLMPQK FAICFTIGCA FIIGSFFALK GPKNQLTHMT SKERLPFTAL FIGSMVGTIY VSMVLHSYIL SVLFSVIQVL ALSYYVISYF
201: PGGSAGMRFL SSTLTSSIFR CFGR
001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.