Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400074185 | Potato | cytosol, endoplasmic reticulum, peroxisome | 80.89 | 81.25 |
| Solyc12g006250.1.1 | Tomato | plasma membrane | 80.44 | 80.8 |
| VIT_19s0015g01110.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 73.78 | 71.55 |
Protein Annotations
| EntrezGene:100264952 | wikigene:100264952 | MapMan:35.2 | ProteinID:CBI28479 | ProteinID:CBI28479.3 | UniProt:D7TDA6 |
| EMBL:FN595759 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | EntrezGene:LOC100264952 | wikigene:LOC100264952 | PFAM:PF04178 | PANTHER:PTHR23137 |
| PANTHER:PTHR23137:SF10 | TMHMM:TMhelix | UniParc:UPI00015CA52B | ArrayExpress:VIT_12s0057g01380 | EnsemblPlantsGene:VIT_12s0057g01380 | EnsemblPlants:VIT_12s0057g01380.t01 |
| InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | unigene:Vvi.9148 | RefSeq:XP_002264182 | RefSeq:XP_002264182.1 | SEG:seg |
Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:D7TDA6]
Coordinates
chr12:+:10115723..10117844
Molecular Weight (calculated)
24266.8 Da
IEP (calculated)
9.791
GRAVY (calculated)
0.579
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MQKTAQAWFM GGPSSSSGRE KSPASLLADW NAYAASQEPD SSALGFDLEA AVRTANDKVS GSFNVVSKGV RDIPGSFQSA ATNVPSGKSL MYFSLLLAAG
101: IFFVFIAFAM FLPVMVLMPQ KFAICFTIGC VFIIGSFFAL KGPKNQLAHM FSRERLPFTL GFISSMVGTI YVSMVLHSYV FSVLFSVLQV LALSYYAISY
201: FPGGSAGMKF LSSTLTSLIL KCFGR
101: IFFVFIAFAM FLPVMVLMPQ KFAICFTIGC VFIIGSFFAL KGPKNQLAHM FSRERLPFTL GFISSMVGTI YVSMVLHSYV FSVLFSVLQV LALSYYAISY
201: FPGGSAGMKF LSSTLTSLIL KCFGR
001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
Arabidopsis Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.