Factsheet for VIT_19s0015g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane

Predictor Summary:

plastid 3
cytosol 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0002g03770.t01
VIT_12s0035g01150.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26550.1	VIT_12s0035g01150.t01	AT3G11730.1	21798944
AT5G56020.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46429	Soybean	plasma membrane	72.84	76.82
AT4G26550.1	Thale cress	plasma membrane	74.14	76.44
KRG98435	Soybean	plasma membrane	72.41	76.36
GSMUA_Achr7P06090_001	Banana	cytosol, peroxisome, plastid	74.14	75.77
EER88631	Sorghum	plastid	73.28	75.56
GSMUA_Achr3P04250_001	Banana	plasma membrane	74.14	74.78
Bra026423.1-P	Field mustard	plasma membrane	72.84	74.78
CDX89326	Canola	cytosol, peroxisome, plasma membrane	72.84	74.78
CDX94317	Canola	cytosol, peroxisome, plasma membrane	72.84	74.78
PGSC0003DMT400057335	Potato	plasma membrane	74.14	73.82
VIT_12s0057g01380.t01	Wine grape	plastid	71.55	73.78
TraesCS7D01G377300.1	Wheat	plasma membrane, plastid	71.98	73.57
Solyc07g065850.2.1	Tomato	plasma membrane	73.71	73.39
CDX92816	Canola	plasma membrane	73.28	73.28
CDY42730	Canola	plasma membrane	73.28	72.96
TraesCS7A01G381000.1	Wheat	plastid	71.12	72.05
AT5G56020.1	Thale cress	plasma membrane	71.12	71.74
Os06t0608600-01	Rice	plasma membrane	71.12	71.43
EER97654	Sorghum	plasma membrane, plastid	67.24	68.42
TraesCS7A01G220800.1	Wheat	plastid	66.81	68.28
TraesCS7B01G126600.1	Wheat	plasma membrane, plastid	66.81	68.28
TraesCS7D01G221300.1	Wheat	golgi	66.81	68.28
TraesCS7B01G282900.1	Wheat	plastid	66.38	67.84
Os06t0300300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane, plastid	65.09	66.23
Zm00001d007053_P001	Maize	plasma membrane	67.67	56.07
CDY06543	Canola	endoplasmic reticulum, plasma membrane, vacuole	28.45	44.59
Bra019100.1-P	Field mustard	cytosol	68.97	35.4

Protein Annotations

EntrezGene:100256660	wikigene:100256660	MapMan:35.2	ProteinID:CBI39795	ProteinID:CBI39795.3	UniProt:D7UAN0
EMBL:FN596747	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	EntrezGene:LOC100256660	wikigene:LOC100256660	PFAM:PF04178	PANTHER:PTHR23137
PANTHER:PTHR23137:SF10	TIGR:TC54829	TMHMM:TMhelix	UniParc:UPI00015CBB5F	ArrayExpress:VIT_19s0015g01110	EnsemblPlantsGene:VIT_19s0015g01110
EnsemblPlants:VIT_19s0015g01110.t01	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2	unigene:Vvi.4608	RefSeq:XP_002273570	RefSeq:XP_002273570.1
SEG:seg	:	:	:	:	:

Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:D7UAN0]

Coordinates

chr19:+:9180475..9187445

Molecular Weight (calculated)

24933.4 Da

IEP (calculated)

8.792

GRAVY (calculated)

0.465

Length

232 amino acids

Sequence
(BLAST)

001: MEKMQSWFSP SGSEDLQKAS SSSSSSLLAQ WNSYAAESRS SEEEGSLGMG MGFDLESAVR SANDTVTGTF SVVSKGVRDL PGNIQSATSN VPSGRSLMYF
101: GILLATGVFF VFIAFTMFLP VMVLMPQKFA LCFTIGCSFI IGSFFALKGP KNQLAHMSTK ERLPFTLGFI GSMVGTIYVS MVLHSYILSV LFSVLQVLAL
201: AYYAISYFPG GSAGLKFLSS ALTSSILKCF GR

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.