Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026423.1-P | Field mustard | plasma membrane | 92.0 | 91.59 |
| CDX94317 | Canola | cytosol, peroxisome, plasma membrane | 92.0 | 91.59 |
| CDX89326 | Canola | cytosol, peroxisome, plasma membrane | 91.56 | 91.15 |
| CDX92816 | Canola | plasma membrane | 92.44 | 89.66 |
| CDY42730 | Canola | plasma membrane | 91.56 | 88.41 |
| AT5G56020.1 | Thale cress | plasma membrane | 84.89 | 83.04 |
| KRH46429 | Soybean | plasma membrane | 73.78 | 75.45 |
| KRG98435 | Soybean | plasma membrane | 73.78 | 75.45 |
| GSMUA_Achr3P04250_001 | Banana | plasma membrane | 76.44 | 74.78 |
| VIT_19s0015g01110.t01 | Wine grape | cytosol, peroxisome, plasma membrane, plastid | 76.44 | 74.14 |
| GSMUA_Achr7P06090_001 | Banana | cytosol, peroxisome, plastid | 74.22 | 73.57 |
| EER88631 | Sorghum | plastid | 72.89 | 72.89 |
| TraesCS7D01G377300.1 | Wheat | plasma membrane, plastid | 71.56 | 70.93 |
| PGSC0003DMT400057335 | Potato | plasma membrane | 73.33 | 70.82 |
| Solyc07g065850.2.1 | Tomato | plasma membrane | 72.89 | 70.39 |
| TraesCS7A01G381000.1 | Wheat | plastid | 70.67 | 69.43 |
| EER97654 | Sorghum | plasma membrane, plastid | 70.22 | 69.3 |
| TraesCS7A01G220800.1 | Wheat | plastid | 69.78 | 69.16 |
| TraesCS7B01G126600.1 | Wheat | plasma membrane, plastid | 69.33 | 68.72 |
| TraesCS7D01G221300.1 | Wheat | golgi | 69.33 | 68.72 |
| Os06t0300300-01 | Rice | cytosol, endoplasmic reticulum, plasma membrane, plastid | 69.33 | 68.42 |
| Os06t0608600-01 | Rice | plasma membrane | 70.22 | 68.4 |
| TraesCS7B01G282900.1 | Wheat | plastid | 66.22 | 65.64 |
| Zm00001d007053_P001 | Maize | plasma membrane | 69.78 | 56.07 |
| Bra019100.1-P | Field mustard | cytosol | 86.22 | 42.92 |
Protein Annotations
| MapMan:35.2 | EntrezGene:828761 | UniProt:A0A178UYE8 | ProteinID:AEE85217.1 | ArrayExpress:AT4G26550 | EnsemblPlantsGene:AT4G26550 |
| RefSeq:AT4G26550 | TAIR:AT4G26550 | RefSeq:AT4G26550-TAIR-G | EnsemblPlants:AT4G26550.1 | TAIR:AT4G26550.1 | EMBL:BT024614 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 |
| GO:GO:0005802 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016192 | RefSeq:NP_567749.1 | ProteinID:OAO98134.1 | PFAM:PF04178 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR23137 | PANTHER:PTHR23137:SF10 |
| UniProt:Q2HIG7 | TMHMM:TMhelix | UniParc:UPI0000162B24 | InterPro:Vesicle_transpt_Got1/SFT2 | InterPro:Vesicle_transpt_SFT2 | : |
Description
Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
Coordinates
chr4:-:13402379..13404385
Molecular Weight (calculated)
24142.4 Da
IEP (calculated)
8.458
GRAVY (calculated)
0.548
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.