CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73855
CDY47919
CDY52126
CDY56593
CDY67905

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26550.1	CDX73855	AT3G11730.1	21798944
AT4G26550.1	CDY47919	AT3G11730.1	21798944
AT4G26550.1	CDY56593	AT3G11730.1	21798944
AT4G26550.1	CDY52126	AT5G58750.1	21798944
AT4G26550.1	CDY67905	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89326	Canola	cytosol, peroxisome, plasma membrane	99.56	99.56
Bra026423.1-P	Field mustard	plasma membrane	98.67	98.67
AT4G26550.1	Thale cress	plasma membrane	91.59	92.0
CDX92816	Canola	plasma membrane	92.04	89.66
CDY42730	Canola	plasma membrane	92.04	89.27
KRG98435	Soybean	plasma membrane	72.12	74.09
KRH46429	Soybean	plasma membrane	72.12	74.09
VIT_19s0015g01110.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	74.78	72.84
GSMUA_Achr7P06090_001	Banana	cytosol, peroxisome, plastid	73.01	72.69
EER88631	Sorghum	plastid	72.12	72.44
GSMUA_Achr3P04250_001	Banana	plasma membrane	73.45	72.17
TraesCS7D01G377300.1	Wheat	plasma membrane, plastid	71.24	70.93
PGSC0003DMT400057335	Potato	plasma membrane	71.68	69.53
TraesCS7A01G381000.1	Wheat	plastid	70.35	69.43
Solyc07g065850.2.1	Tomato	plasma membrane	71.24	69.1
Os06t0608600-01	Rice	plasma membrane	70.35	68.83
TraesCS7A01G220800.1	Wheat	plastid	69.03	68.72
TraesCS7B01G126600.1	Wheat	plasma membrane, plastid	69.03	68.72
TraesCS7D01G221300.1	Wheat	golgi	69.03	68.72
Os06t0300300-01	Rice	cytosol, endoplasmic reticulum, plasma membrane, plastid	69.03	68.42
EER97654	Sorghum	plasma membrane, plastid	69.03	68.42
TraesCS7B01G282900.1	Wheat	plastid	65.93	65.64
Zm00001d007053_P001	Maize	plasma membrane	68.58	55.36
CDY06543	Canola	endoplasmic reticulum, plasma membrane, vacuole	31.86	48.65

Protein Annotations

EnsemblPlants:CDX94317	EnsemblPlantsGene:GSBRNA2T00157418001	GO:A0A078DZG1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Vesicle_transpt_Got1/SFT2	InterPro:Vesicle_transpt_SFT2	PANTHER:PTHR23137
PANTHER:PTHR23137:SF10	PFAM:PF04178	ProteinID:CDX94317	ProteinID:CDX94317.1	TMHMM:TMhelix	UniParc:UPI0004EBFA91
MapMan:35.2	:	:	:	:	:

Description

BnaC01g18670D

Coordinates

chrLK031881:+:186402..188369

Molecular Weight (calculated)

24275.6 Da

IEP (calculated)

8.040

GRAVY (calculated)

0.529

Length

226 amino acids

Sequence
(BLAST)

001: MSQGWFSMSS GDQQKEQQNQ SGSSLLADWN SYAASRDVEE GGGSFGFDIE SAVRSANDTV SGTFSVVSKG VRDIPGSLSS ATSSMPSGKA LMYFGLLLAS
101: GVFFIFIAFT MFLPVMVLMP QKFAICFTLG CGFIIGSFFA LRGPQNQLAH MTSMERLPLT IGFIATMVGT IYVSMVLHSY ILSVLFSVLQ VLALVYYCIS
201: YFPGGSSGMK FLGSALTSSV LRVFGR

Best Arabidopsis Sequence Match ( AT4G26550.1 )
(BLAST)

001: MSQGWFSMGG SSTVDQQQQS GSSLLADWNS YAASRDFEES GGSFGFDIES AVRSANDTVS GTFSVVSKGV RDIPGSLQSA TSSMPSGKAL MYFGLLLASG
101: VFFIFIAFTM FLPVMVLMPQ KFAICFTLGC GFIIGSFFAL RGPKNQLAHM SSMERLPSTL GFIATMVGTI YVSMVLHSYI LSVLFSVLQV LALVYYCISY
201: FPGGSSGMRF LSSALTSSAL RVFGR

Arabidopsis Description

Vesicle transport protein [Source:UniProtKB/TrEMBL;Acc:A0A178UYE8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.