CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67589
CDX73507
CDX74794
CDX78209
CDX97509
CDY18870
CDY23634
CDY37483
CDY51584
CDY51735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58750.1	CDX74794	AT2G40380.1	21798944
AT5G58750.1	CDY18870	AT2G40380.1	21798944
AT5G58750.1	CDX97509	AT3G13710.1	21798944
AT5G58750.1	CDY23634	AT3G13710.1	21798944
AT5G58750.1	CDY37483	AT3G13710.1	21798944
AT5G58750.1	CDY51735	AT3G13710.1	21798944
AT5G58750.1	CDX67589	AT3G54120.1	21798944
AT5G58750.1	CDX73507	AT3G54120.1	21798944
AT5G58750.1	CDX78209	AT3G54120.1	21798944
AT5G58750.1	CDY51584	AT3G54120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52126	Canola	cytosol	96.12	96.62
Bra002620.1-P	Field mustard	cytosol	95.09	95.34
AT5G58750.1	Thale cress	cytosol	88.11	88.34
KRG98294	Soybean	mitochondrion	57.62	56.6
KRH30354	Soybean	cytosol	54.52	55.97
GSMUA_Achr5P28860_001	Banana	plastid	49.35	45.91
CDY36344	Canola	extracellular	8.79	39.53
CDY08911	Canola	cytosol	35.14	34.87
CDY24831	Canola	cytosol	35.14	34.87
CDX92623	Canola	cytosol	34.11	34.74
CDY10994	Canola	cytosol	33.33	34.04
CDY03474	Canola	cytosol	34.11	33.93
CDY34267	Canola	cytosol	34.11	33.85

Protein Annotations

EnsemblPlants:CDY67905	EnsemblPlantsGene:GSBRNA2T00067653001	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR32487	PANTHER:PTHR32487:SF7
ProteinID:CDY67905	ProteinID:CDY67905.1	SUPFAM:SSF51735	UniParc:UPI0004EB7831	UniProt:A0A078JN52	MapMan:35.1

Description

BnaCnng56900DBnaCnng56900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JN52]

Coordinates

chrLK036638:-:5965..7128

Molecular Weight (calculated)

44360.2 Da

IEP (calculated)

6.377

GRAVY (calculated)

-0.294

Length

387 amino acids

Sequence
(BLAST)

001: MGSENGSVTN TNDDENVALI FGVTGLVGRE IVKTLTMSNK PKWRIYGVAR NPEISSMTKM YSFISCDLLN SSETKQKLSP LQDIVSHVFW VTWSGEYPLD
101: SDECCVQNRT MLANALDAML PNAKRLKHFS LQTGMKHYVS LVGETLSRGG EGSSLCYYSE ECPRKSSGKN FYYVLEDLLK EKISGDSVVW SVQRPGLLMG
201: SSTRTLYNFM GSLCVYGAMC KYLNLPFVFG GTRECWEECY IDGSDSNLVA EQHIFAATSG RVRDKGEAFN AINGVGFTWK EIWPEIGRKL GVQVNEATMF
301: DEGFWFEREM GERKHVWDEI LVKEELVRTR MEDLANWVFM DVLFRCPFKL LGRRDKVDKF GFKRKYRTLD SILYWIDVMR EEKLIPY

Best Arabidopsis Sequence Match ( AT5G58750.1 )
(BLAST)

001: MGSENGSLMR RNEVDENVAL IFGVTGLVGR EIVKTLLMSK PGWRIYGVAR NPEINSMTKM YNFISCDLLN ASETKQRLSP LQDIVSHVFW VTWSGEFPLD
101: TDECCVQNKT MLMNALDAIL PNAKRLKHFS LQTGMKHYVS LVEETMARGE GSSLYYYSEE CPRKSSGKNF YYVLEDLLKE KITRSSVVWS VQRPGLLMGS
201: SSRTLYNFMG SLCVYGAMCK YLNLPFVFGG TRECWEESYI DGSDSNLVAE QHIFAATSGK VREKGEAFNA INGVGFTWKE IWPEIGKKLG VQVNETTMFD
301: EGFWFGREMV ERKHVWDEIV VKEKLVRTEI EDLANWYFLD ALFRCPFKLL GKREKVDRFG FKRKYRTLDS VLYWIDVMRD EKLIPL

Arabidopsis Description

At5g58750 [Source:UniProtKB/TrEMBL;Acc:Q9LUY6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.