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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plasma membrane, plastid, vacuole
BaCelLo:plastid
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67559
CDX73575
CDX78151
CDX78308
CDX81068
CDX86802
CDX90792
CDY05135
CDY05723
CDY13240
CDY13313
CDY31990
CDY39001
CDY41713
CDY52984
CDY59269
CDY65544
CDY67261

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54120.1 CDY52984 AT1G52220.1 21798944
AT3G54120.1 CDY67261 AT1G52220.1 21798944
AT3G54120.1 CDY39001 AT1G56330.1 21798944
AT3G54120.1 CDY41713 AT1G56330.1 21798944
AT3G54120.1 CDY59269 AT1G56330.1 21798944
AT3G54120.1 CDY65544 AT1G56330.1 21798944
AT3G54120.1 CDY05723 AT2G20130.1 21798944
AT3G54120.1 CDY31990 AT2G20130.1 21798944
AT3G54120.1 CDX67559 AT3G53180.1 21798944
AT3G54120.1 CDX73575 AT3G53180.1 21798944
AT3G54120.1 CDX78151 AT3G53180.1 21798944
AT3G54120.1 CDY13313 AT3G53180.1 21798944
AT3G54120.1 CDX86802 AT4G11220.1 21798944
AT3G54120.1 CDX90792 AT4G11220.1 21798944
AT3G54120.1 CDY05135 AT4G11220.1 21798944
AT3G54120.1 CDY13240 AT4G11220.1 21798944
AT3G54120.1 CDX78308 AT5G07730.1 21798944
AT3G54120.1 CDX81068 AT5G07730.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX67589 Canola golgi, plasma membrane, vacuole 97.04 97.04
CDX78209 Canola golgi, plasma membrane, vacuole 83.25 82.44
CDX73507 Canola cytosol, golgi, plasma membrane 81.77 80.98
AT3G54120.1 Thale cress cytosol, plasma membrane, vacuole 78.82 78.82
KRH75801 Soybean plasma membrane 55.66 54.07
VIT_08s0007g01720.t01 Wine grape plasma membrane 55.17 53.59
KRH66004 Soybean endoplasmic reticulum, golgi, plasma membrane 55.17 53.59
PGSC0003DMT400052428 Potato cytosol, plasma membrane, vacuole 53.69 52.15
Solyc09g013110.2.1 Tomato cytosol, plasma membrane, vacuole 52.22 50.72
GSMUA_Achr10P... Banana plasma membrane 48.77 43.04
Os04t0367400-02 Rice plasma membrane 40.89 38.97
GSMUA_Achr8P02250_001 Banana cytosol, mitochondrion, peroxisome, plasma membrane 45.81 37.65
Zm00001d042846_P001 Maize plasma membrane 38.92 37.62
EES03891 Sorghum golgi, peroxisome, plasma membrane 38.92 37.26
OQU78555 Sorghum extracellular 39.41 36.2
GSMUA_Achr6P33560_001 Banana plasma membrane 46.31 35.61
CDY46172 Canola plastid 34.98 35.15
CDX82294 Canola plastid 33.5 34.69
CDX99221 Canola plasma membrane 34.48 34.48
Os01t0851300-01 Rice golgi, plasma membrane, vacuole 34.48 34.48
CDY22971 Canola plasma membrane 33.0 34.18
CDY22970 Canola plasma membrane 32.51 33.67
Zm00001d039213_P001 Maize golgi, plasma membrane, plastid 34.48 29.91
CDY00975 Canola cytosol, endoplasmic reticulum, peroxisome 34.48 29.29
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 35.96 29.08
CDX71213 Canola plasma membrane 29.06 29.06
CDY48222 Canola cytosol, endoplasmic reticulum, plasma membrane 29.06 29.06
CDY08567 Canola cytosol 34.48 29.05
CDY36282 Canola plasma membrane 31.53 28.7
CDY38194 Canola cytosol, nucleus, plasma membrane 34.48 28.0
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 34.48 27.89
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 33.99 27.6
CDX79993 Canola cytosol, peroxisome, plasma membrane 33.5 27.09
CDY53913 Canola cytosol, peroxisome, plasma membrane 33.5 26.77
CDY52012 Canola cytosol, peroxisome, plasma membrane 33.0 26.38
CDY67571 Canola plasma membrane 29.06 26.34
CDY51936 Canola endoplasmic reticulum, peroxisome, plasma membrane 29.06 26.34
CDY48510 Canola cytosol 31.53 26.34
CDY42012 Canola cytosol, peroxisome, plasma membrane 32.51 26.29
CDY07184 Canola cytosol, peroxisome, plasma membrane 31.03 25.93
CDX75962 Canola plasma membrane 28.57 25.89
CDX96038 Canola plasma membrane 26.6 25.59
CDY13240 Canola cytosol, peroxisome, plasma membrane 20.2 25.47
CDY66516 Canola endoplasmic reticulum, extracellular 23.15 25.27
CDY01898 Canola plasma membrane 26.11 25.0
CDY62522 Canola cytosol 9.85 25.0
CDY10954 Canola cytosol 33.0 24.81
CDY57657 Canola cytosol, nucleus, plasma membrane 33.5 24.73
CDX90792 Canola cytosol, peroxisome, plasma membrane 32.51 24.72
CDY44123 Canola cytosol, nucleus, plasma membrane 33.0 24.28
CDY24806 Canola cytosol 32.51 24.09
CDX81500 Canola plasma membrane 24.63 24.04
CDY08616 Canola plasma membrane 28.08 23.85
CDY00916 Canola plasma membrane 28.08 23.85
CDY41666 Canola cytosol 32.02 23.55
CDY05135 Canola mitochondrion 33.0 21.41
CDX89122 Canola extracellular, mitochondrion 14.29 18.95
CDX86802 Canola cytosol, nucleus, peroxisome 22.66 18.78
CDX82165 Canola endoplasmic reticulum, peroxisome, plasma membrane, plastid 21.67 17.74
CDY46067 Canola plasma membrane 17.73 17.31
CDX76854 Canola plasma membrane 17.24 16.91
CDY56712 Canola mitochondrion 29.56 16.9
CDY12701 Canola plasma membrane 24.63 16.56
Protein Annotations
MapMan:13.7.2.1GO:A0A078IQC9UniProt:A0A078IQC9EnsemblPlants:CDY51584ProteinID:CDY51584ProteinID:CDY51584.1
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789
GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00003782001InterPro:IPR003388PFAM:PF02453PFscan:PS50845
PANTHER:PTHR10994PANTHER:PTHR10994:SF65InterPro:ReticulonTMHMM:TMhelixUniParc:UPI0004EEF087SEG:seg
Description
BnaC06g42520DReticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQC9]
Coordinates
chrLK033008:+:59881..60760
Molecular Weight (calculated)
23112.6 Da
IEP (calculated)
8.056
GRAVY (calculated)
0.378
Length
203 amino acids
Sequence
(BLAST)
001: MGSCSDKLFK RERTVHEILG GGIIADVILW RNKNVSVGIV TVTISSWMVF ESFAYTILTL LSSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEEMAE
101: EASKLLRFHV NKLLQVTYDT AMGRDTELFI KVAVYLLLIS LVGSLMDFQT LCHTGVLVVM TVPAFYDRYE DCIDGSLVFI YNKAKELYHR FEIRSYLKNK
201: KLS
Best Arabidopsis Sequence Match ( AT3G54120.1 )
(BLAST)
001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
Arabidopsis Description
RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.