Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX79447
CDX81033
CDX84035
CDX84751
CDX89402
CDX89404
CDX94426
CDX94429
CDX96860
CDY49093
CDY49480
CDY58876
CDY62016
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G53180.1 CDX84035 AT1G14340.1 21798944
AT3G53180.1 CDX96860 AT1G14340.1 21798944
AT3G53180.1 CDY49093 AT1G14340.1 21798944
AT3G53180.1 CDY62016 AT1G14340.1 21798944
AT3G53180.1 CDX79447 AT2G31955.1 21798944
AT3G53180.1 CDX84751 AT2G31955.1 21798944
AT3G53180.1 CDX89402 AT4G25660.1 21798944
AT3G53180.1 CDX89404 AT4G25660.1 21798944
AT3G53180.1 CDX94426 AT4G25660.1 21798944
AT3G53180.1 CDX94429 AT4G25660.1 21798944
AT3G53180.1 CDY49480 AT4G25660.1 21798944
AT3G53180.1 CDY66007 AT4G25660.1 21798944
AT3G53180.1 CDX81033 AT5G07110.1 21798944
AT3G53180.1 CDY58876 AT5G07110.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX67559 Canola cytosol 96.21 94.59
CDX73575 Canola cytosol 88.26 88.05
CDX78151 Canola cytosol 88.02 85.01
AT3G53180.1 Thale cress cytosol 86.8 83.33
Solyc10g083830.1.1 Tomato extracellular 50.24 67.05
PGSC0003DMT400072665 Potato cytosol 28.73 66.57
VIT_08s0007g04670.t01 Wine grape cytosol 67.97 66.19
KRH32570 Soybean cytosol, nucleus 64.79 63.4
Zm00001d031055_P001 Maize cytosol 12.22 62.11
GSMUA_AchrUn_... Banana cytosol 39.0 61.7
Zm00001d047936_P001 Maize cytosol 13.2 60.34
Zm00001d044569_P001 Maize cytosol 13.2 60.34
GSMUA_AchrUn_... Banana cytosol 23.35 59.69
TraesCS1A01G143000.1 Wheat cytosol 60.88 59.22
TraesCS1D01G141800.1 Wheat golgi 60.88 59.14
TraesCS1B01G158600.1 Wheat cytosol 60.88 59.14
Solyc01g056400.1.1 Tomato endoplasmic reticulum, extracellular 4.77 59.09
HORVU1Hr1G038060.9 Barley cytosol 60.76 58.89
EER91525 Sorghum cytosol 60.39 58.67
Zm00001d032815_P011 Maize cytosol 60.39 58.67
Zm00001d033947_P001 Maize cytosol 7.95 58.04
Os10t0456500-02 Rice plasma membrane 59.78 57.87
PGSC0003DMT400024814 Potato cytosol 20.54 55.81
TraesCS6D01G065600.1 Wheat cytosol 54.89 55.09
Solyc10g083550.1.1 Tomato cytosol 26.65 54.64
HORVU6Hr1G012290.5 Barley cytosol 54.89 53.26
PGSC0003DMT400048935 Potato cytosol 16.87 51.3
Solyc06g011330.1.1 Tomato cytosol 18.58 51.01
KRH32567 Soybean endoplasmic reticulum 26.77 50.81
PGSC0003DMT400072666 Potato cytosol 52.2 50.41
Solyc10g083840.1.1 Tomato cytosol 9.9 50.31
Solyc10g083850.1.1 Tomato cytosol 50.73 49.82
Solyc01g056430.1.1 Tomato cytosol 20.05 49.7
PGSC0003DMT400072398 Potato cytosol 28.36 49.47
Solyc01g056390.1.1 Tomato cytosol, nucleus 6.48 48.62
KRH75546 Soybean plastid 13.08 46.52
Zm00001d021367_P001 Maize cytosol 11.49 45.41
PGSC0003DMT400024816 Potato cytosol 16.38 41.88
Solyc01g056450.1.1 Tomato cytosol 12.35 41.39
Solyc06g011290.1.1 Tomato cytosol 19.56 41.03
PGSC0003DMT400048929 Potato cytosol, plastid 8.31 39.53
PGSC0003DMT400048927 Potato cytosol 7.09 37.91
Protein Annotations
KEGG:00220+6.3.1.2KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2Gene3D:3.10.20.70Gene3D:3.20.20.140
Gene3D:3.30.590.10MapMan:35.2GO:A0A078FLY1UniProt:A0A078FLY1InterPro:Amidohydro-relEnsemblPlants:CDY13313
ProteinID:CDY13313ProteinID:CDY13313.1GO:GO:0003674GO:GO:0003824GO:GO:0004356GO:GO:0006542
GO:GO:0006807GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00071300001InterPro:Gln_synt_NInterPro:Gln_synt_b-graspInterPro:Gln_synth/guanido_kin_cat_domInterPro:Gln_synth_cat_domInterPro:IPR036651
InterPro:Metal_HydrolasePFAM:PF00120PFAM:PF04909PFAM:PF16952PANTHER:PTHR43785PANTHER:PTHR43785:SF2
MetaCyc:PWY-381MetaCyc:PWY-5675MetaCyc:PWY-6549MetaCyc:PWY-6963MetaCyc:PWY-6964SMART:SM01230
SUPFAM:SSF51556SUPFAM:SSF54368SUPFAM:SSF55931UniParc:UPI0004EDCBFDSEG:seg:
Description
BnaC06g14440DBnaC06g14440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLY1]
Coordinates
chrLK032034:-:220678..224638
Molecular Weight (calculated)
90980.0 Da
IEP (calculated)
6.429
GRAVY (calculated)
-0.148
Length
818 amino acids
Sequence
(BLAST)
001: MEFKELKKAI DQVELVDAHA HNIVSLDSSF PFIRTFSEAT GDALSFAPHS LSFKRNLREV AQLYGTEVSL EAIEKHRQTL GLHSLTTKCF YEARISALLI
101: DDGLKLDKKH DTEWHRNFVP YVGRVLRIET LAEQILNEEK IVALKTIAAY RSGLDIDTHV SKEVVESGLV EVLQAGKPVR IGNKGLIDYI LTLSLEVAER
201: CDLPLQIHTG FGDKDLDLRL SNPLHLRTLL EDKRFAKCRI VLLHHASYPF SKEASYLSSV YPQVFLDFGL AVPKLSVHGM VSSVKELLHL APTKKVMFST
301: DGYATPETYY LGAKKAREVI FLVLRDACVS GDLSLMEAID AAKDILSRNA IAFYKIDVDT SSSIPQSRIS PKSEMEEPHA QEDSSSFVRV IWVDTSGQQR
401: CRVVQAQRFN RSVKKNGIGL THASMGMTSF YDGPAEESKL TGIGEIRLVP DLSTKRIIPW TKQESMVLAD MLLKPGEAWE YCPRETLRRV RNVLKDEFDL
501: VMNAGFENEF YLLKNVVREG KEEYVPFEVG PYCSTSSYDA AAQIFHEIIP ALESLNIAVE QFHAESGKGQ FEVSLGHTIA FHAADNLVYT REVIRSVARK
601: HGLLATFVPK YDLCDIGSGS HVHISLWKNG ENVFPASDKS SAHGMSSIGE EFMAGVLFHL PSIFAVLAPL PNSYDRIQPN TFSGAFQCWG KENREAAIRT
701: ASPPGAPDGL VTNFEIKACD GSTNPHLSLA IIMAAGIDGL RRHLQLPDPI DTNPADVAAT LNRLPETLSE AVEALEKDKV LHELLGQNLL AAITGVRKAE
801: VQYYSKNPDA CKQLIHRY
Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)
001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY
Arabidopsis Description
Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.