Factsheet for Solyc10g083850.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073730.2.1
Solyc02g082060.1.1
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT3G53180.1	Solyc01g073730.2.1	AT2G31955.1	21798944
AT3G53180.1	Solyc02g082060.1.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072666	Potato	cytosol	84.75	83.35
Solyc01g056390.1.1	Tomato	cytosol, nucleus	9.12	69.72
Solyc01g056400.1.1	Tomato	endoplasmic reticulum, extracellular	5.16	65.15
Solyc10g083830.1.1	Tomato	extracellular	43.1	58.56
Solyc01g056430.1.1	Tomato	cytosol	23.17	58.48
Solyc10g083840.1.1	Tomato	cytosol	10.8	55.9
VIT_08s0007g04670.t01	Wine grape	cytosol	54.5	54.05
KRH32570	Soybean	cytosol, nucleus	52.58	52.39
CDX73575	Canola	cytosol	50.42	51.22
Bra028548.1-P	Field mustard	cytosol	49.82	50.8
CDY13313	Canola	cytosol	49.82	50.73
Solyc10g083550.1.1	Tomato	cytosol	24.13	50.38
Bra006975.1-P	Field mustard	cytosol	50.78	49.94
CDX78151	Canola	cytosol	50.78	49.94
CDX67559	Canola	cytosol	49.7	49.76
AT3G53180.1	Thale cress	cytosol	50.54	49.41
GSMUA_AchrUn_...	Banana	cytosol	18.85	49.06
Solyc06g011290.1.1	Tomato	cytosol	22.45	47.95
Solyc01g056450.1.1	Tomato	cytosol	13.93	47.54
GSMUA_AchrUn_...	Banana	cytosol	28.81	46.42
Os10t0456500-02	Rice	plasma membrane	46.94	46.27
TraesCS1D01G141800.1	Wheat	golgi	46.46	45.96
TraesCS1B01G158600.1	Wheat	cytosol	46.46	45.96
TraesCS1A01G143000.1	Wheat	cytosol	46.34	45.9
Solyc06g011330.1.1	Tomato	cytosol	16.33	45.64
HORVU1Hr1G038060.9	Barley	cytosol	46.22	45.62
EER91525	Sorghum	cytosol	45.98	45.49
KRH32567	Soybean	endoplasmic reticulum	23.53	45.48
Zm00001d032815_P011	Maize	cytosol	45.86	45.37
TraesCS6D01G065600.1	Wheat	cytosol	43.46	44.42
HORVU6Hr1G012290.5	Barley	cytosol	42.98	42.47
KRH75546	Soybean	plastid	11.4	41.3
Zm00001d021367_P001	Maize	cytosol	9.6	38.65
Zm00001d044569_P001	Maize	cytosol	8.28	38.55
Zm00001d047936_P001	Maize	cytosol	8.28	38.55
Zm00001d031055_P001	Maize	cytosol	7.08	36.65
Zm00001d033947_P001	Maize	cytosol	4.08	30.36

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	Gene3D:3.10.20.70	Gene3D:3.20.20.140
Gene3D:3.30.590.10	MapMan:35.2	InterPro:Amidohydro-rel	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356
GO:GO:0006542	GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	InterPro:Gln_synt_N	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_cat_dom	InterPro:IPR036651	UniProt:K4D3H1
InterPro:Metal_Hydrolase	PFAM:PF00120	PFAM:PF04909	PANTHER:PTHR43785	PANTHER:PTHR43785:SF2	SMART:SM01230
SUPFAM:SSF51556	SUPFAM:SSF54368	SUPFAM:SSF55931	EnsemblPlantsGene:Solyc10g083850.1	EnsemblPlants:Solyc10g083850.1.1	UniParc:UPI000276A0BA
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:63584488..63591862

Molecular Weight (calculated)

93570.1 Da

IEP (calculated)

5.822

GRAVY (calculated)

-0.144

Length

833 amino acids

Sequence
(BLAST)

001: MDKFLELKRA VETVEIVDTH AHNIVALHSN LPFISCFSEA KEEDETIDFK NPTNLCKVSL PIIQIPKEER SSIVEISMRS LNEIAELYGS KLSVNAVQES
101: RQHLGLESSA NTCFKAARIS ALLIDDGLDL DKKLDIKWHE HFAPKVGRIL QIEDVAKKIL EKCRVPMEQS GHWIHSWRIS QRKADKVTAF KSIVAYRTGL
201: AINTDVTVKE AEGGLSEVLC GGNAVRISNK SFLDYIFMHA LVVAQSYDLP MQIDTGFGEK DLDLRLANPL NLRNLLEDKR FTKNRLVLLH VSYPFSKEAS
301: YLASVYPQVY LDFGLAIPKL RYHRMISSVK ELMDFAPINK VMFSTDGFAF AESFYLGARI AREVVFSVLR DACIDGDLSI PEALAVVKDI FAETKEQNDS
401: LTDVTLVRIM WLDFSGQHRC RVIPQQRFNS SVRKDGLGLT VECMGLTSVC DDLTYDTWLP ASGEARTVPD LSTKCRVPWA KHQEMVLTDM LTESGKPWHY
501: CPRDVLCRFS KILEDEYGLV MDVGVEVEFY ILKTIVADDK EVMQSLDRTP YCSTAAIDAA SSVLNEIVAC LQSLNITIEQ IHSESGKGQF EIVLGYTDAI
601: TQADNLVYTH EIIKGIARKH GLLATFMPKY SPDSSWPYRE DQSVHDVGSG SHVHISLSKN GENVFTASSD YNRYGMSKFG ESFMAGVLSH VRSICVFSCP
701: LPISNSKNFS SRAFGYERFQ TKSWNALFLC WGPETKELTM RTCSPPGTNG AVTNFELRTF DGCANPPLGF AALLVAGIDG LRNNLKIADP ADEWFLETMG
801: ENFLKARRGV YGDEIKYYCE CGKDPYSEVM FKY

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.