Factsheet for Solyc01g056430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073730.2.1
Solyc02g082060.1.1
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT3G53180.1	Solyc01g073730.2.1	AT2G31955.1	21798944
AT3G53180.1	Solyc02g082060.1.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g056390.1.1	Tomato	cytosol, nucleus	28.79	87.16
Solyc01g056400.1.1	Tomato	endoplasmic reticulum, extracellular	16.36	81.82
PGSC0003DMT400048935	Potato	cytosol	61.52	75.46
Solyc10g083840.1.1	Tomato	cytosol	29.09	59.63
GSMUA_AchrUn_...	Banana	cytosol	40.91	42.19
Solyc06g011290.1.1	Tomato	cytosol	44.85	37.95
KRH75546	Soybean	plastid	24.55	35.22
KRH32567	Soybean	endoplasmic reticulum	41.82	32.02
Solyc10g083850.1.1	Tomato	cytosol	58.48	23.17
VIT_08s0007g04670.t01	Wine grape	cytosol	52.73	20.71
CDX73575	Canola	cytosol	50.3	20.24
KRH32570	Soybean	cytosol, nucleus	50.91	20.1
CDY13313	Canola	cytosol	49.7	20.05
Bra028548.1-P	Field mustard	cytosol	49.39	19.95
AT3G53180.1	Thale cress	cytosol	51.21	19.84
CDX67559	Canola	cytosol	48.48	19.23
Bra006975.1-P	Field mustard	cytosol	49.09	19.13
CDX78151	Canola	cytosol	49.09	19.13
TraesCS1B01G158600.1	Wheat	cytosol	44.85	17.58
HORVU1Hr1G038060.9	Barley	cytosol	44.85	17.54
TraesCS1A01G143000.1	Wheat	cytosol	44.55	17.48
TraesCS1D01G141800.1	Wheat	golgi	44.24	17.34
EER91525	Sorghum	cytosol	43.64	17.1
Os10t0456500-02	Rice	plasma membrane	43.64	17.04
Zm00001d032815_P011	Maize	cytosol	43.33	16.98
TraesCS6D01G065600.1	Wheat	cytosol	40.91	16.56
HORVU6Hr1G012290.5	Barley	cytosol	41.21	16.13
Solyc10g083830.1.1	Tomato	extracellular	23.03	12.4
Zm00001d021367_P001	Maize	cytosol	1.52	2.42
GSMUA_AchrUn_...	Banana	cytosol	3.03	1.93
Solyc06g011330.1.1	Tomato	cytosol	0.91	1.01
Solyc10g083550.1.1	Tomato	cytosol	0.91	0.75
Solyc01g056450.1.1	Tomato	cytosol	0.0	0.0
PGSC0003DMT400048929	Potato	cytosol, plastid	0.0	0.0
Zm00001d031055_P001	Maize	cytosol	0.0	0.0
Zm00001d033947_P001	Maize	cytosol	0.0	0.0
Zm00001d044569_P001	Maize	cytosol	0.0	0.0
Zm00001d047936_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc01g056430.1.1	EnsemblPlantsGene:Solyc01g056430.1	Gene3D:3.20.20.140	GO:GO:0003674	GO:GO:0003824	GO:GO:0016787
InterPro:Amidohydro-rel	InterPro:Metal_Hydrolase	PANTHER:PTHR20852	PANTHER:PTHR20852:SF65	PFAM:PF04909	SUPFAM:SSF51556
UniParc:UPI0002763559	UniProt:K4AVL1	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr1:+:54152035..54155999

Molecular Weight (calculated)

37360.0 Da

IEP (calculated)

5.601

GRAVY (calculated)

0.009

Length

330 amino acids

Sequence
(BLAST)

001: MENFEDLKRA VESVEMVDAH AHNIVALDST LPFISCFSEF IGAKTASDSP NFVNFQVNLN EICELYGSSL SLHAVEESRR CLGFEASAAV CFKAARIAIL
101: LIDDGIKLDQ KLDIKWHERF VPTVGRILQV EHVAENILEK EAEEGLIDIL CGESYKIWGS YVYDFHVILI IDSVFPAGKP VRISNKNFSD YIFMHALEVA
201: KNFNLPMQIH TGLEKDLDLR PGSPLNLPNL LEDKRFTKNR LVILHASFPF LKEASNLSSV YPQVYLDFGL RVPKPNFHGF VSSVKEIMDL APINKVMINS
301: SGIAFAERFY LGMSRDSYLK YYNNNKPIEI

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.