Factsheet for Solyc10g083550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073730.2.1
Solyc02g082060.1.1
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT3G53180.1	Solyc01g073730.2.1	AT2G31955.1	21798944
AT3G53180.1	Solyc02g082060.1.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072398	Potato	cytosol	90.73	77.19
Solyc06g011330.1.1	Tomato	cytosol	37.84	50.67
Zm00001d047936_P001	Maize	cytosol	19.3	43.02
Zm00001d044569_P001	Maize	cytosol	19.3	43.02
Zm00001d031055_P001	Maize	cytosol	17.29	42.86
GSMUA_AchrUn_...	Banana	cytosol	53.88	41.59
Solyc10g083830.1.1	Tomato	extracellular	63.66	41.44
Zm00001d021367_P001	Maize	cytosol	20.8	40.1
Solyc01g056450.1.1	Tomato	cytosol	23.81	38.93
Zm00001d033947_P001	Maize	cytosol	9.52	33.93
VIT_08s0007g04670.t01	Wine grape	cytosol	58.4	27.74
Bra028548.1-P	Field mustard	cytosol	54.89	26.81
CDY13313	Canola	cytosol	54.64	26.65
CDX73575	Canola	cytosol	54.64	26.59
Bra006975.1-P	Field mustard	cytosol	55.89	26.33
CDX78151	Canola	cytosol	55.89	26.33
CDX67559	Canola	cytosol	54.64	26.2
KRH32570	Soybean	cytosol, nucleus	54.64	26.08
AT3G53180.1	Thale cress	cytosol	55.39	25.94
HORVU1Hr1G038060.9	Barley	cytosol	54.39	25.71
TraesCS1D01G141800.1	Wheat	golgi	54.14	25.65
TraesCS1A01G143000.1	Wheat	cytosol	53.63	25.45
TraesCS1B01G158600.1	Wheat	cytosol	53.63	25.42
Os10t0456500-02	Rice	plasma membrane	53.63	25.33
Zm00001d032815_P011	Maize	cytosol	53.13	25.18
EER91525	Sorghum	cytosol	52.38	24.82
TraesCS6D01G065600.1	Wheat	cytosol	49.37	24.17
Solyc10g083850.1.1	Tomato	cytosol	50.38	24.13
HORVU6Hr1G012290.5	Barley	cytosol	50.88	24.08
GSMUA_AchrUn_...	Banana	cytosol	2.51	3.12
Solyc01g056400.1.1	Tomato	endoplasmic reticulum, extracellular	0.5	3.03
KRH32567	Soybean	endoplasmic reticulum	2.01	1.86
Solyc06g011290.1.1	Tomato	cytosol	1.75	1.79
KRH75546	Soybean	plastid	1.0	1.74
Solyc10g083840.1.1	Tomato	cytosol	0.5	1.24
Solyc01g056390.1.1	Tomato	cytosol, nucleus	0.25	0.92
Solyc01g056430.1.1	Tomato	cytosol	0.75	0.91

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	Gene3D:3.10.20.70	Gene3D:3.30.590.10
MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0006542	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Gln_synt_N	InterPro:Gln_synth/guanido_kin_cat_dom
InterPro:Gln_synth_cat_dom	InterPro:IPR036651	UniProt:K4D3E2	PFAM:PF00120	PANTHER:PTHR43785	PANTHER:PTHR43785:SF2
SMART:SM01230	SUPFAM:SSF55931	EnsemblPlantsGene:Solyc10g083550.1	EnsemblPlants:Solyc10g083550.1.1	UniParc:UPI0002769F24	SEG:seg

Description

No Description!

Coordinates

chr10:+:63332206..63335653

Molecular Weight (calculated)

43932.5 Da

IEP (calculated)

5.460

GRAVY (calculated)

-0.129

Length

399 amino acids

Sequence
(BLAST)

001: MDRCESSSVG SSCEEGNYNS SDEAFKPVPF VRILWIDNSG IHRCRVIPRE RLSFVKKHGL GLSPACLAAL SSVSNCPAEG SNLGFTGMIR IIPDLSTRCK
101: IPWEKQQEMT LADMCIEPDK PWEYCPREVF RRVTKILKDE FDLVVNVGFE IEFYLLKSVV KNGKEEWLPI DKTSYCSTSG FDVSSSILED IVTYLQTINI
201: TVEQVHAETG KGQFEVVLGY AEASTAIASL IYAREVIKSV ARQHGQMATF VPKYAEDEDG SGSHVHISLS RNGENVFMAS GDSKYGMSKI GESFMAGVLN
301: HLPAILAFTA THPLSYEHLV PKTKNAAYLC WGKENTEAPL RTASPPGIAD DFVNHFEIKA FDACTNPYIG LASIIISGVD GLRKDLSLPK PVDGGKELL

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.