Factsheet for Os10t0456500-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0258900-01
Os04t0641400-02
Os06t0107000-01
Os12t0507000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	Os04t0641400-02	AT1G14340.1	21798944
AT3G53180.1	Os02t0258900-01	AT2G31955.1	21798944
AT3G53180.1	Os12t0507000-01	AT2G31955.1	21798944
AT3G53180.1	Os06t0107000-01	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G141800.1	Wheat	golgi	83.31	83.61
TraesCS1B01G158600.1	Wheat	cytosol	83.08	83.37
TraesCS1A01G143000.1	Wheat	cytosol	82.49	82.88
Zm00001d032815_P011	Maize	cytosol	81.78	82.07
EER91525	Sorghum	cytosol	81.78	82.07
HORVU1Hr1G038060.9	Barley	cytosol	81.89	81.99
Zm00001d031055_P001	Maize	cytosol	15.15	79.5
Zm00001d047936_P001	Maize	cytosol	16.45	77.65
Zm00001d044569_P001	Maize	cytosol	16.45	77.65
Zm00001d033947_P001	Maize	cytosol	10.06	75.89
TraesCS6D01G065600.1	Wheat	cytosol	71.83	74.48
HORVU6Hr1G012290.5	Barley	cytosol	72.66	72.84
GSMUA_AchrUn_...	Banana	cytosol	26.75	70.62
GSMUA_AchrUn_...	Banana	cytosol	39.53	64.6
VIT_08s0007g04670.t01	Wine grape	cytosol	63.79	64.17
Solyc10g083830.1.1	Tomato	extracellular	46.04	63.46
PGSC0003DMT400072665	Potato	cytosol	26.51	63.46
Solyc01g056400.1.1	Tomato	endoplasmic reticulum, extracellular	4.85	62.12
KRH32570	Soybean	cytosol, nucleus	60.59	61.24
Bra006975.1-P	Field mustard	cytosol	60.24	60.09
CDX78151	Canola	cytosol	60.24	60.09
Bra028548.1-P	Field mustard	cytosol	57.87	59.85
CDY13313	Canola	cytosol	57.87	59.78
CDX73575	Canola	cytosol	57.99	59.76
AT3G53180.1	Thale cress	cytosol	60.24	59.74
CDX67559	Canola	cytosol	58.7	59.62
Zm00001d021367_P001	Maize	cytosol	14.2	57.97
KRH32567	Soybean	endoplasmic reticulum	27.57	54.06
Solyc10g083550.1.1	Tomato	cytosol	25.33	53.63
PGSC0003DMT400024814	Potato	cytosol	18.22	51.16
PGSC0003DMT400072666	Potato	cytosol	48.05	47.93
PGSC0003DMT400072398	Potato	cytosol	26.51	47.76
Solyc06g011330.1.1	Tomato	cytosol	16.8	47.65
Solyc10g083850.1.1	Tomato	cytosol	46.27	46.94
PGSC0003DMT400048935	Potato	cytosol	14.91	46.84
Solyc01g056390.1.1	Tomato	cytosol, nucleus	6.04	46.79
KRH75546	Soybean	plastid	12.66	46.52
Solyc10g083840.1.1	Tomato	cytosol	8.64	45.34
Solyc01g056430.1.1	Tomato	cytosol	17.04	43.64
Solyc01g056450.1.1	Tomato	cytosol	12.19	42.21
PGSC0003DMT400024816	Potato	cytosol	15.98	42.19
PGSC0003DMT400048929	Potato	cytosol, plastid	8.4	41.28
Solyc06g011290.1.1	Tomato	cytosol	18.11	39.23
PGSC0003DMT400048927	Potato	cytosol	6.27	34.64

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	Gene3D:3.10.20.70	Gene3D:3.20.20.140
Gene3D:3.30.590.10	MapMan:35.2	EntrezGene:4348794	EMBL:AK066867	InterPro:Amidohydro-rel	ProteinID:BAF26669.1
ProteinID:BAT11131.1	ProteinID:EEE51073.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0006542
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
InterPro:Gln_synt_N	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_cat_dom	InterPro:IPR036651	InterPro:Metal_Hydrolase	EnsemblPlantsGene:Os10g0456500
EnsemblPlants:Os10t0456500-02	PFAM:PF00120	PFAM:PF04909	PANTHER:PTHR43785	PANTHER:PTHR43785:SF2	UniProt:Q0IX96
SMART:SM01230	SUPFAM:SSF51556	SUPFAM:SSF54368	SUPFAM:SSF55931	UniParc:UPI0000DD99D8	RefSeq:XP_015614516.1
SEG:seg	:	:	:	:	:

Description

Similar to Glutamine synthetase (Fragment). (Os10t0456500-01);Similar to Nodulin 6l. (Os10t0456500-02)

Coordinates

chr10:+:16686837..16693490

Molecular Weight (calculated)

93723.5 Da

IEP (calculated)

6.196

GRAVY (calculated)

-0.073

Length

845 amino acids

Sequence
(BLAST)

001: MEMESKYAAL RRAAEEAAAV DAHAHNLVAD GSAFPFLRCF SEADAADALA LAPHTLSFKR SLRDIAALYN CEASLEKVEE FRRAEGLSSI SSKCFKAANL
101: SAILIDDGID FDKMLELEAH KAFAPTVGRI LRIEKLAETI INDESFSASS WTLDSFTEIF VTKLKSVANK IVGLKSIAAY RSGLEIDPNI SKTDAEDGLR
201: KELSGQRPLR ITNKNLIDYL FTCSLEIAVS YHLPMQIHTG FGDKDLDLRK CNPLHLRAVL EDTRFSKCQI VLLHASYPFS KEASYLASVY SQVYLDFGLA
301: IPKLSVQGMT SSIKELLELA PIKKVMFSTD GYAFPETYYL GARRARDVVY RVLSAACEDG DLSIQEAIEA VEDIFRRNAL YLYKLNVANG SVGQITAIAD
401: NGIPLSEQDV LFVRVVWIDT SGQHRCRVVP AGRFYEIARK KGIGLTFASM GMTSFTDGPA DGTNLTGVGE IRLMPDMSTL LRLPWSRREE MVMAEMHIRP
501: GEAWEYCPRN TLRKVTKVLL DEFNVTMMAG FENEFFLRKK VVSGEKELWV PFDNTPYCST TAFDGASSVL QEVYTSLKAA EIVVEQLHAE SGKGQFEIAL
601: KYVLCTLAAD KLIYAREIIK SVARKHGLLA TFLPKPDLND IGSGSHVHLS LWEFDQNVFM GSSEYNYYGM SRIGESFLAG VYLHLPSILA FTAPHPNSYN
701: RIQPNTWSGA YQCWGKENRE APLRTACPPG IPLDLVSNFE IKSFDACANP HLGLAAIVAA GIDGLRRSLT LPEPTESNPA GYASNSKLKR MPKDLMESVE
801: ALAADKIMHE LIGDKLVTAV IAVRKAEIDH YEKNPAAFAD LIHRY

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.