Factsheet for PGSC0003DMT400048927

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018924
PGSC0003DMT400065786
PGSC0003DMT400074537

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	PGSC0003DMT400065786	AT1G14340.1	21798944
AT3G53180.1	PGSC0003DMT400074537	AT2G31955.1	21798944
AT3G53180.1	PGSC0003DMT400018924	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033947_P001	Maize	cytosol	30.72	41.96
PGSC0003DMT400024816	Potato	cytosol	71.24	34.06
Zm00001d031055_P001	Maize	cytosol	32.03	30.43
Zm00001d047936_P001	Maize	cytosol	34.64	29.61
Zm00001d044569_P001	Maize	cytosol	34.64	29.61
Zm00001d021367_P001	Maize	cytosol	26.8	19.81
PGSC0003DMT400072665	Potato	cytosol	38.56	16.71
PGSC0003DMT400072398	Potato	cytosol	37.91	12.37
GSMUA_AchrUn_...	Banana	cytosol	41.18	12.19
PGSC0003DMT400072666	Potato	cytosol	50.98	9.21
CDY13313	Canola	cytosol	37.91	7.09
AT3G53180.1	Thale cress	cytosol	39.22	7.04
Bra028548.1-P	Field mustard	cytosol	37.25	6.98
CDX78151	Canola	cytosol	38.56	6.97
Bra006975.1-P	Field mustard	cytosol	38.56	6.97
CDX73575	Canola	cytosol	37.25	6.95
CDX67559	Canola	cytosol	36.6	6.73
KRH32570	Soybean	cytosol, nucleus	36.6	6.7
VIT_08s0007g04670.t01	Wine grape	cytosol	35.29	6.43
EER91525	Sorghum	cytosol	34.64	6.29
Zm00001d032815_P011	Maize	cytosol	34.64	6.29
Os10t0456500-02	Rice	plasma membrane	34.64	6.27
TraesCS6D01G065600.1	Wheat	cytosol	33.33	6.26
TraesCS1A01G143000.1	Wheat	cytosol	33.99	6.18
TraesCS1D01G141800.1	Wheat	golgi	33.99	6.18
HORVU1Hr1G038060.9	Barley	cytosol	33.99	6.16
TraesCS1B01G158600.1	Wheat	cytosol	33.33	6.06
HORVU6Hr1G012290.5	Barley	cytosol	32.03	5.81
PGSC0003DMT400048929	Potato	cytosol, plastid	3.92	3.49
KRH32567	Soybean	endoplasmic reticulum	0.65	0.23
PGSC0003DMT400048935	Potato	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
PGSC0003DMT400024814	Potato	cytosol	0.0	0.0
KRH75546	Soybean	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400048927	EnsemblPlantsGene:PGSC0003DMG400019011	Gene3D:3.30.590.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_cat_dom	KEGG:00220+6.3.1.2
KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	PANTHER:PTHR43785	PANTHER:PTHR43785:SF2	PFAM:PF00120
PGSC:PGSC0003DMG400019011	SUPFAM:SSF55931	UniParc:UPI00029565DC	UniProt:M1BN20	MapMan:35.2	:

Description

Nodulin / glutamate-ammonia ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400019011]

Coordinates

chr00:-:4286595..4287146

Molecular Weight (calculated)

17510.1 Da

IEP (calculated)

6.094

GRAVY (calculated)

-0.103

Length

153 amino acids

Sequence
(BLAST)

001: MYSYERLMSK SRNSSFICWG VECKELPVRA CCPPGDANGV VTNFEIKTFD GSANPHLGLA SIIIAGIHGL RRNLSIPEPV EPESYVFDWN NDDIRVPGSL
101: RCAIIHMDSD KWFNEMLGQE FLYTRRGVVG VRLLLFNEFQ FIHIRTDYCQ TLM

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.