Factsheet for PGSC0003DMT400074537

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009994

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31955.1	PGSC0003DMT400009994	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g073730.2.1	Tomato	nucleus	97.98	85.64
Bra022872.1-P	Field mustard	mitochondrion	79.83	74.26
CDX84751	Canola	mitochondrion	79.83	74.26
CDX79447	Canola	mitochondrion	79.25	73.73
AT2G31955.1	Thale cress	cytosol	80.98	72.05
KRH13856	Soybean	mitochondrion	81.84	71.0
KRH43566	Soybean	cytosol, mitochondrion, plastid	81.56	70.75
KXG30456	Sorghum	mitochondrion	79.83	70.3
GSMUA_Achr1P19680_001	Banana	mitochondrion	82.13	70.02
Os12t0507000-01	Rice	mitochondrion	78.96	68.67
Os02t0258900-01	Rice	mitochondrion	77.81	68.53
Zm00001d016866_P001	Maize	mitochondrion	78.96	67.49
VIT_13s0156g00170.t01	Wine grape	cytosol	84.15	58.4
TraesCS5B01G066700.1	Wheat	mitochondrion	77.81	57.69
TraesCS5A01G059400.1	Wheat	mitochondrion	77.52	57.48
TraesCS5D01G070900.1	Wheat	mitochondrion	77.23	56.66
HORVU5Hr1G014920.3	Barley	mitochondrion	71.47	51.77
CDY42083	Canola	extracellular, mitochondrion	17.58	42.36

Protein Annotations

KEGG:00790+4.1.99.22	Gene3D:3.20.20.70	MapMan:7.1.1.1	InterPro:Aldolase_TIM	InterPro:Elp3/MiaB/NifB	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006777	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019008	GO:GO:0019538	GO:GO:0046872	GO:GO:0051536	GO:GO:0051539	InterPro:IPR013785
UniProt:M1CTU7	HAMAP:MF_01225_B	InterPro:Main_SPASM_domain-containing	InterPro:MoaA	InterPro:MoaA_NifB_PqqE_Fe-S-bd_CS	InterPro:Mob_synth_C
PFAM:PF04055	PFAM:PF06463	PFAM:PF13353	EnsemblPlantsGene:PGSC0003DMG401028974	PGSC:PGSC0003DMG401028974	EnsemblPlants:PGSC0003DMT400074537
ScanProsite:PS01305	PANTHER:PTHR22960	PANTHER:PTHR22960:SF0	SMART:SM00729	InterPro:SPASM/twitch_domain-containing	SUPFAM:SSF102114
TIGRFAMs:TIGR02666	UniParc:UPI00029645CC	InterPro:rSAM	:	:	:

Description

Molybdopterin cofactor synthesis protein A [Source:PGSC_GENE;Acc:PGSC0003DMG401028974]

Coordinates

chr1:+:66951119..66959864

Molecular Weight (calculated)

38826.3 Da

IEP (calculated)

8.265

GRAVY (calculated)

-0.208

Length

347 amino acids

Sequence
(BLAST)

001: MYSTSCETLS EDPSKDRAIS DMLIDSFGRI HTYLRISLTE RCNLRCHYCM PAEGVELTPS PQLLSQDEIV RLASLFVSSG VDKIRLTGGE PTIRKDIEEL
101: CLQLSNLKGL KTLAMTTNGI TLGKKLPKLK DSGLNLVNIS LDTLVPAKFE FMTRRKGHGR VMESIDAAVK LGYNPVKVNC VVMRGFNDDE ICDFVELTRE
201: RPINVRFIEF MPFDGNVWNV KKLVPYAEML DKVVEKFTGL QRIQDHPTET AKNFRIDGHQ GSVSFITSMT EHFCAGCNRL RLLADGNFKV CLFGPSEVSL
301: RDPIRLGEGD DKLREIIGAA VKRKKASHAG MFDLAKTPNR PMIHIGG

Best Arabidopsis Sequence Match ( AT2G31955.1 )
(BLAST)

001: MRRCFSKITD CHLGFKNSNF LLVGSEVGSG SVTRTITTTT SERLFSSSYA AHQVDQIKDN PVSDMLIDKF GRLHTYLRIS LTERCNLRCQ YCMPSEGVEL
101: TPKPQLLSQS EIVRLAGLFV SAGVNKIRLT GGEPTVRKDI EEICLQLSSL KGLKNLAITT NGITLAKKLP RLKECGLDSL NISLDTLVPA KFEFLTRRKG
201: HDRVMKSIDT AIELGYNPVK VNCVIMRGLN DDEICDFVEL TRDKPINVRF IEFMPFDGNV WNVKKLVPYA EVMDKVVKRF PSIKRMQDHP TETAKNFTID
301: GHCGSVSFIT SMTEHFCAGC NRLRLLADGN FKVCLFGPSE VSLRDPLRSG ADDEALREII GAAVKRKKAA HAGMLDIAKT ANRPMIHIGG

Arabidopsis Description

CNX2CNX2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.