Factsheet for VIT_13s0156g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g04830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31955.1	VIT_02s0025g04830.t01	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074537	Potato	cytosol	58.4	84.15
Bra022872.1-P	Field mustard	mitochondrion	60.2	80.7
CDX84751	Canola	mitochondrion	60.2	80.7
CDX79447	Canola	mitochondrion	59.4	79.62
AT2G31955.1	Thale cress	cytosol	61.0	78.21
KRH43566	Soybean	cytosol, mitochondrion, plastid	61.8	77.25
KRH13856	Soybean	mitochondrion	61.6	77.0
Solyc01g073730.2.1	Tomato	nucleus	59.8	75.31
GSMUA_Achr1P19680_001	Banana	mitochondrion	58.4	71.74
KXG30456	Sorghum	mitochondrion	56.2	71.32
Os02t0258900-01	Rice	mitochondrion	56.2	71.32
Os12t0507000-01	Rice	mitochondrion	56.4	70.68
Zm00001d016866_P001	Maize	mitochondrion	55.8	68.72
TraesCS5B01G066700.1	Wheat	mitochondrion	57.0	60.9
TraesCS5A01G059400.1	Wheat	mitochondrion	56.2	60.04
TraesCS5D01G070900.1	Wheat	mitochondrion	56.6	59.83
HORVU5Hr1G014920.3	Barley	mitochondrion	52.0	54.28
CDY42083	Canola	extracellular, mitochondrion	12.6	43.75

Protein Annotations

KEGG:00790+4.1.99.22	EntrezGene:100264746	wikigene:100264746	Gene3D:3.20.20.70	MapMan:7.1.1.1	InterPro:Aldolase_TIM
ProteinID:CCB56684	ProteinID:CCB56684.1	InterPro:Elp3/MiaB/NifB	UniProt:F6HPS8	EMBL:FN596003	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0006777	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019008	GO:GO:0019538	GO:GO:0046872
GO:GO:0051536	GO:GO:0051539	InterPro:IPR013785	EntrezGene:LOC100264746	wikigene:LOC100264746	HAMAP:MF_01225_B
InterPro:Main_SPASM_domain-containing	InterPro:MoaA	InterPro:MoaA_NifB_PqqE_Fe-S-bd_CS	InterPro:Mob_synth_C	PFAM:PF04055	PFAM:PF06463
PFAM:PF13353	ScanProsite:PS01305	PANTHER:PTHR22960	PANTHER:PTHR22960:SF0	SMART:SM00729	InterPro:SPASM/twitch_domain-containing
SUPFAM:SSF102114	TIGRFAMs:TIGR02666	UniParc:UPI000210800E	ArrayExpress:VIT_13s0156g00170	EnsemblPlantsGene:VIT_13s0156g00170	EnsemblPlants:VIT_13s0156g00170.t01
unigene:Vvi.14348	RefSeq:XP_002267864	RefSeq:XP_002267864.1	InterPro:rSAM	SEG:seg	:

Description

No Description!

Coordinates

chr13:-:23904811..23926448

Molecular Weight (calculated)

55343.0 Da

IEP (calculated)

8.438

GRAVY (calculated)

-0.197

Length

500 amino acids

Sequence
(BLAST)

001: MAQAHKLQIG FGQCCGSILG LGLGSLQPTT NPYGFLVVKQ AEKTEGSELA LLTANPFALF ELWLNGDTRK PENMMPATMR RYASKTSGWR LGLKKLNFFS
101: VNCESESYFC QGSGNCQGLT SSFIDGTMSQ AYATSCERLS KSLIKDNPTS DKLSYATSCA QLSEAPARDN PVSDMLVDSF GRRHTYLRIS LTERCNLRCM
201: YCMPAEGVEL TPNPQLLSQN EIVRLANLFV SSGVDKIRLT GGEPTIRKDI EEICSQLSSL KGLKTLAITT NGITLARKLP KLKECGLSSV NISLDTLVPA
301: KFEFMTRRKG HERVMESIHT AIDLGYNPVK VNCVVMRGFN DDEICDFVEM TRDKPINIRF IEFMPFDGNV WNVKKLVPYA EMLDRVVKQF TSLKRLQDHP
401: TETAKNFTID GHCGTVSFIT SMTKNFCAGC NRLRLLADGN FKVCLFGPSE VSLRDPLRSG VDDHELGEII GAAVKRKKAS HAGMFDIAKT ANRPMIHIGG

Best Arabidopsis Sequence Match ( AT2G31955.1 )
(BLAST)

001: MRRCFSKITD CHLGFKNSNF LLVGSEVGSG SVTRTITTTT SERLFSSSYA AHQVDQIKDN PVSDMLIDKF GRLHTYLRIS LTERCNLRCQ YCMPSEGVEL
101: TPKPQLLSQS EIVRLAGLFV SAGVNKIRLT GGEPTVRKDI EEICLQLSSL KGLKNLAITT NGITLAKKLP RLKECGLDSL NISLDTLVPA KFEFLTRRKG
201: HDRVMKSIDT AIELGYNPVK VNCVIMRGLN DDEICDFVEL TRDKPINVRF IEFMPFDGNV WNVKKLVPYA EVMDKVVKRF PSIKRMQDHP TETAKNFTID
301: GHCGSVSFIT SMTEHFCAGC NRLRLLADGN FKVCLFGPSE VSLRDPLRSG ADDEALREII GAAVKRKKAA HAGMLDIAKT ANRPMIHIGG

Arabidopsis Description

CNX2CNX2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.