Factsheet for Solyc01g073730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc08g079830.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G31955.1	Solyc08g079830.2.1	AT1G12520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074537	Potato	cytosol	85.64	97.98
Bra022872.1-P	Field mustard	mitochondrion	69.77	74.26
CDX84751	Canola	mitochondrion	69.77	74.26
CDX79447	Canola	mitochondrion	69.52	73.99
KRH43566	Soybean	cytosol, mitochondrion, plastid	73.3	72.75
AT2G31955.1	Thale cress	cytosol	71.28	72.56
KRH13856	Soybean	mitochondrion	73.05	72.5
GSMUA_Achr1P19680_001	Banana	mitochondrion	73.55	71.74
KXG30456	Sorghum	mitochondrion	70.28	70.81
Os12t0507000-01	Rice	mitochondrion	69.27	68.92
Os02t0258900-01	Rice	mitochondrion	68.01	68.53
Zm00001d016866_P001	Maize	mitochondrion	69.77	68.23
VIT_13s0156g00170.t01	Wine grape	cytosol	75.31	59.8
TraesCS5B01G066700.1	Wheat	mitochondrion	68.77	58.33
TraesCS5A01G059400.1	Wheat	mitochondrion	68.01	57.69
TraesCS5D01G070900.1	Wheat	mitochondrion	68.51	57.51
HORVU5Hr1G014920.3	Barley	mitochondrion	63.22	52.4
CDY42083	Canola	extracellular, mitochondrion	15.37	42.36

Protein Annotations

KEGG:00790+4.1.99.22	Gene3D:3.20.20.70	MapMan:7.1.1.1	InterPro:Aldolase_TIM	InterPro:Elp3/MiaB/NifB	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006777	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019008	GO:GO:0019538	GO:GO:0046872	GO:GO:0051536	GO:GO:0051539	InterPro:IPR013785
UniProt:K4AXB9	HAMAP:MF_01225_B	InterPro:Main_SPASM_domain-containing	InterPro:MoaA	InterPro:MoaA_NifB_PqqE_Fe-S-bd_CS	InterPro:Mob_synth_C
PFAM:PF04055	PFAM:PF06463	PFAM:PF13353	ScanProsite:PS01305	PANTHER:PTHR22960	PANTHER:PTHR22960:SF0
SMART:SM00729	InterPro:SPASM/twitch_domain-containing	SUPFAM:SSF102114	EnsemblPlantsGene:Solyc01g073730.2	EnsemblPlants:Solyc01g073730.2.1	TIGRFAMs:TIGR02666
UniParc:UPI000276174C	InterPro:rSAM	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:81097986..81102912

Molecular Weight (calculated)

44456.0 Da

IEP (calculated)

9.152

GRAVY (calculated)

-0.227

Length

397 amino acids

Sequence
(BLAST)

001: MRPSIFRFFH WHLRHNSLTS ASFSSRASLL SASISGQNIT ASHHNGSLSK MYSTSCETLS EDPSKDRAIS DMLIDSFGRM HTYLRISLTE RCNLRCHYCM
101: PAEGVELTPS PQLLSREEIV RLASLFVSSG VDKIRLTGGE PTIRKDIEEL CLELSSLKGL KTLAMTTNGI TLGKKLPKLK DSGLNLVNIS LDTLVPAKFE
201: FMTRRKGHGR VMESIDAAVK LGYNPVKVNC VVMRGFNDDE ICDFVDLTRE RPINVRFIEF MPFDGNVWNV KKLVPYAEML DKVVEKFTGL QRIQDHRTET
301: AKNFRIDGHQ GSVSFITSMT EHFCAGCNRL RLLADGNFKV CLFGPSEVSL RDPIRLGEGD DKLREIIGAA VKRKKASHAG MFDLAKTPNR PMIHIGG

Best Arabidopsis Sequence Match ( AT2G31955.1 )
(BLAST)

001: MRRCFSKITD CHLGFKNSNF LLVGSEVGSG SVTRTITTTT SERLFSSSYA AHQVDQIKDN PVSDMLIDKF GRLHTYLRIS LTERCNLRCQ YCMPSEGVEL
101: TPKPQLLSQS EIVRLAGLFV SAGVNKIRLT GGEPTVRKDI EEICLQLSSL KGLKNLAITT NGITLAKKLP RLKECGLDSL NISLDTLVPA KFEFLTRRKG
201: HDRVMKSIDT AIELGYNPVK VNCVIMRGLN DDEICDFVEL TRDKPINVRF IEFMPFDGNV WNVKKLVPYA EVMDKVVKRF PSIKRMQDHP TETAKNFTID
301: GHCGSVSFIT SMTEHFCAGC NRLRLLADGN FKVCLFGPSE VSLRDPLRSG ADDEALREII GAAVKRKKAA HAGMLDIAKT ANRPMIHIGG

Arabidopsis Description

CNX2CNX2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0P6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.