Factsheet for Solyc08g079830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
PTS1:	peroxisome
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g067960.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	Solyc06g067960.2.1	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009994	Potato	plastid	94.86	94.55
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	60.45	74.31
Zm00001d026069_P001	Maize	cytosol	25.08	74.29
OQU82186	Sorghum	cytosol	57.88	73.17
KRH57335	Soybean	plastid	71.06	72.7
HORVU2Hr1G094650.1	Barley	extracellular	53.7	69.01
CDY16008	Canola	plastid	66.56	65.09
CDY26568	Canola	plastid	64.95	63.72
AT1G12520.1	Thale cress	plastid	64.63	62.81
TraesCS2D01G396500.1	Wheat	plastid	62.38	62.78
Bra016768.1-P	Field mustard	plastid	63.67	62.66
Os04t0573200-01	Rice	plastid	62.7	62.5
CDY21055	Canola	plastid	63.67	62.46
Zm00001d002611_P002	Maize	plastid	61.74	62.34
CDY58614	Canola	plastid	63.67	62.26
TraesCS2A01G399000.1	Wheat	plastid	61.74	61.74
TraesCS2B01G417000.1	Wheat	plastid	60.77	61.36
GSMUA_Achr4P24900_001	Banana	plastid	57.56	59.87
CDY39819	Canola	plastid	37.62	53.42
Bra036642.1-P	Field mustard	plastid	37.62	53.42
CDY03250	Canola	plastid	37.3	52.97
Bra026968.1-P	Field mustard	cytosol	65.27	40.28

Protein Annotations

Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006801	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016532	GO:GO:0030001	GO:GO:0030234
GO:GO:0043085	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	InterPro:IPR036423
UniProt:K4CNY3	PFAM:PF00080	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR10003	PANTHER:PTHR10003:SF27
InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	SUPFAM:SSF55008	EnsemblPlantsGene:Solyc08g079830.2
EnsemblPlants:Solyc08g079830.2.1	UniParc:UPI000276B507	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:-:63275494..63278511

Molecular Weight (calculated)

32989.4 Da

IEP (calculated)

6.927

GRAVY (calculated)

-0.027

Length

311 amino acids

Sequence
(BLAST)

001: MAFLRSIVTA KTTAIAAAIP AAAFAVSSIS SSSQFERPLK NLKFGSISSS NSILQLSFAK NLQKKSPPSA LHMETHSSNH QTSSDNGVVL PELLTEFMVD
101: MSCQGCVSAV KSKLQTVEGV KNVDVDLDNQ VVRILGSSPV KTMTEALEQT GRKARLIGQG VPDDFLISAA VAEFKGPDIF GVVRLAQVNM ELTRIEANFS
201: GLSPGKHAWS INEFGDLTRG AASTGKLYSL PLGDLGTLDV DEKGEAFYSG PKEKLRVADL IGRAIAVYAT EDKSDPGLTA AVIARSAGVG ENYKKLCTCD
301: GTTIWEATSK I

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.