Factsheet for Zm00001d026069_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008736_P001
Zm00001d025657_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	Zm00001d008736_P001	AT3G15660.1	21798944
AT1G12520.1	Zm00001d025657_P001	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82186	Sorghum	cytosol	91.43	39.02
HORVU2Hr1G094650.1	Barley	extracellular	86.67	37.6
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	79.05	32.81
Zm00001d002611_P002	Maize	plastid	91.43	31.17
Os04t0573200-01	Rice	plastid	87.62	29.49
TraesCS2D01G396500.1	Wheat	plastid	86.67	29.45
TraesCS2A01G399000.1	Wheat	plastid	86.67	29.26
TraesCS2B01G417000.1	Wheat	plastid	83.81	28.57
GSMUA_Achr4P24900_001	Banana	plastid	79.05	27.76
KRH57335	Soybean	plastid	75.24	25.99
Solyc08g079830.2.1	Tomato	plastid	74.29	25.08
Bra016768.1-P	Field mustard	plastid	74.29	24.68
CDY21055	Canola	plastid	74.29	24.61
CDY58614	Canola	plastid	74.29	24.53
PGSC0003DMT400009994	Potato	plastid	71.43	24.04
AT1G12520.1	Thale cress	plastid	72.38	23.75
CDY26568	Canola	plastid	70.48	23.34
CDY16008	Canola	plastid	70.48	23.27
Bra026968.1-P	Field mustard	cytosol	69.52	14.48
Bra036642.1-P	Field mustard	plastid	23.81	11.42
CDY39819	Canola	plastid	23.81	11.42
CDY03250	Canola	plastid	22.86	10.96

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	UniProt:A0A1D6JC24	ProteinID:AQK45429.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0006801	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030001
GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	InterPro:IPR036423	PFAM:PF00403
PFscan:PS50846	PANTHER:PTHR10003	PANTHER:PTHR10003:SF27	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	SUPFAM:SSF49329
SUPFAM:SSF55008	UniParc:UPI000844AEAE	EnsemblPlantsGene:Zm00001d026069	EnsemblPlants:Zm00001d026069_P001	EnsemblPlants:Zm00001d026069_T001	:

Description

Copper chaperone for superoxide dismutase chloroplastic/cytosolic

Coordinates

chr10:-:137512705..137515431

Molecular Weight (calculated)

11280.7 Da

IEP (calculated)

6.479

GRAVY (calculated)

-0.118

Length

105 amino acids

Sequence
(BLAST)

001: MVDMKCEGCV TAVKNKLQTL EGIKNIEVDL SNQVVRVLGS RPVKIMLDVL YQTGREARLI GQGNPNAKDK SDPGIAAAVI ARSAGVGENY KELCTCDGVT
101: IWESS

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.