Factsheet for PGSC0003DMT400009994

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
PTS1:	peroxisome
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400073383

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	PGSC0003DMT400073383	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g079830.2.1	Tomato	plastid	94.55	94.86
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	60.58	74.7
KRH57335	Soybean	plastid	71.15	73.03
OQU82186	Sorghum	cytosol	56.73	71.95
Zm00001d026069_P001	Maize	cytosol	24.04	71.43
HORVU2Hr1G094650.1	Barley	extracellular	52.56	67.77
CDY16008	Canola	plastid	66.03	64.78
CDY26568	Canola	plastid	64.42	63.41
AT1G12520.1	Thale cress	plastid	64.42	62.81
Bra016768.1-P	Field mustard	plastid	63.46	62.66
CDY21055	Canola	plastid	63.46	62.46
CDY58614	Canola	plastid	63.46	62.26
TraesCS2D01G396500.1	Wheat	plastid	61.22	61.81
Os04t0573200-01	Rice	plastid	61.54	61.54
Zm00001d002611_P002	Maize	plastid	60.58	61.36
TraesCS2A01G399000.1	Wheat	plastid	60.9	61.09
TraesCS2B01G417000.1	Wheat	plastid	59.94	60.71
GSMUA_Achr4P24900_001	Banana	plastid	57.05	59.53
CDY39819	Canola	plastid	37.5	53.42
Bra036642.1-P	Field mustard	plastid	37.5	53.42
CDY03250	Canola	plastid	37.18	52.97
Bra026968.1-P	Field mustard	cytosol	65.06	40.28

Protein Annotations

EntrezGene:102598129	Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	ProteinID:AAP34306	ProteinID:AAP34306.1
EMBL:AY196210	GO:GO:0003674	GO:GO:0005488	GO:GO:0006801	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	InterPro:IPR036423	UniProt:M0ZXA2	PFAM:PF00080	PFAM:PF00403	EnsemblPlantsGene:PGSC0003DMG400003914
PGSC:PGSC0003DMG400003914	EnsemblPlants:PGSC0003DMT400009994	PFscan:PS50846	PANTHER:PTHR10003	PANTHER:PTHR10003:SF27	InterPro:SOD-like_Cu/Zn_dom_sf
InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	SUPFAM:SSF55008	UniParc:UPI000294AC3A	RefSeq:XP_006363700.1
SEG:seg	:	:	:	:	:

Description

Copper chaperone [Source:PGSC_GENE;Acc:PGSC0003DMG400003914]

Coordinates

chr8:-:53498491..53502439

Molecular Weight (calculated)

33085.5 Da

IEP (calculated)

6.292

GRAVY (calculated)

-0.042

Length

312 amino acids

Sequence
(BLAST)

001: MAFLRSIVTA KTTAIAAAIP AAAFAVSSIS SSSSQFERPS KNLKFGSISS SNPILQLSFA KNLQKTSPPS ALHMETPSSN HQTSSDNGVV LPELLTEFMV
101: DMSCQGCVNA VKSKLQTVEG VKNVDVDLDN QVVRILGSSP VKTMTEALEQ TGRKARLIGQ GVPDDFLISA AVAEFKGPDI FGVVRLAQVN MELTRIEANF
201: SGLSPGKHAW SINEFGDLTR GAASTGKLYS PPLGDLVTLE VDEKGEAFYT GPKEKLRVAD LIGRAIAVYA TEDKTDPGLT AAVIARSAGV GENYKKICAC
301: DGTTIWEATN KL

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.