Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39819 | Canola | plastid | 98.63 | 98.63 |
| Bra016768.1-P | Field mustard | plastid | 64.38 | 44.62 |
| HORVU2Hr1G094650.1 | Barley | extracellular | 47.03 | 42.56 |
| OQU82186 | Sorghum | cytosol | 46.58 | 41.46 |
| VIT_02s0025g04830.t01 | Wine grape | cytosol, peroxisome, plastid | 46.12 | 39.92 |
| KRH57335 | Soybean | plastid | 54.79 | 39.47 |
| Solyc08g079830.2.1 | Tomato | plastid | 53.42 | 37.62 |
| PGSC0003DMT400009994 | Potato | plastid | 53.42 | 37.5 |
| TraesCS2D01G396500.1 | Wheat | plastid | 52.51 | 37.22 |
| TraesCS2A01G399000.1 | Wheat | plastid | 52.05 | 36.66 |
| Zm00001d002611_P002 | Maize | plastid | 50.23 | 35.71 |
| Os04t0573200-01 | Rice | plastid | 50.68 | 35.58 |
| GSMUA_Achr4P24900_001 | Banana | plastid | 48.4 | 35.45 |
| TraesCS2B01G417000.1 | Wheat | plastid | 49.77 | 35.39 |
| Bra026968.1-P | Field mustard | cytosol | 57.53 | 25.0 |
| Zm00001d026069_P001 | Maize | cytosol | 11.42 | 23.81 |
Protein Annotations
| EnsemblPlants:Bra036642.1 | EnsemblPlants:Bra036642.1-P | EnsemblPlantsGene:Bra036642 | Gene3D:2.60.40.200 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0006801 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR036423 |
| InterPro:SOD-like_Cu/Zn_dom_sf | InterPro:SOD_Cu/Zn_/chaperone | InterPro:SOD_Cu_Zn_dom | PANTHER:PTHR10003 | PANTHER:PTHR10003:SF27 | PFAM:PF00080 |
| SUPFAM:SSF49329 | UniParc:UPI0002541A0A | UniProt:M4F6D3 | MapMan:35.1 | : | : |
Description
AT1G12520 (E=7e-057) ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1); superoxide dismutase/ superoxide dismutase copper chaperone
Coordinates
chrA09:-:5909182..5910008
Molecular Weight (calculated)
23593.0 Da
IEP (calculated)
5.823
GRAVY (calculated)
-0.102
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSFLRSVAT IPRAASATPT ESSLHSFSST KPQTFPFPSS QRSLPRLRWG YKRIFASSPM ACVPQVSATA VSEFKGPAIF GVVRFVQISM ENVIIEASFG
101: GLSPGKHSWC INEYGDLTKG AASTGNIYNP LQDDETATQL PGDLGTLEAD QNGEALYTVK KEKMKVTDLI GRAVVVYETE DMSLQGITAA VVARSGEVGE
201: SCRKLCSCDG TTVWEATVY
101: GLSPGKHSWC INEYGDLTKG AASTGNIYNP LQDDETATQL PGDLGTLEAD QNGEALYTVK KEKMKVTDLI GRAVVVYETE DMSLQGITAA VVARSGEVGE
201: SCRKLCSCDG TTVWEATVY
001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV
Arabidopsis Description
CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.