CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES12336
KXG31737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	EES12336	AT3G15660.1	21798944
AT1G12520.1	KXG31737	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026069_P001	Maize	cytosol	39.02	91.43
HORVU2Hr1G094650.1	Barley	extracellular	82.93	84.3
Zm00001d002611_P002	Maize	plastid	94.72	75.65
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	72.36	70.36
TraesCS2D01G396500.1	Wheat	plastid	87.4	69.58
TraesCS2A01G399000.1	Wheat	plastid	87.8	69.45
Os04t0573200-01	Rice	plastid	87.4	68.91
TraesCS2B01G417000.1	Wheat	plastid	85.37	68.18
GSMUA_Achr4P24900_001	Banana	plastid	75.61	62.21
KRH57335	Soybean	plastid	73.58	59.54
Solyc08g079830.2.1	Tomato	plastid	73.17	57.88
PGSC0003DMT400009994	Potato	plastid	71.95	56.73
Bra016768.1-P	Field mustard	plastid	69.51	54.11
CDY58614	Canola	plastid	69.92	54.09
CDY21055	Canola	plastid	69.51	53.94
AT1G12520.1	Thale cress	plastid	68.7	52.81
CDY16008	Canola	plastid	67.89	52.52
CDY26568	Canola	plastid	67.48	52.37
CDY39819	Canola	plastid	41.87	47.03
CDY03250	Canola	plastid	41.46	46.58
Bra036642.1-P	Field mustard	plastid	41.46	46.58
Bra026968.1-P	Field mustard	cytosol	67.89	33.13

Protein Annotations

Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	UniProt:A0A1Z5RFP8	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006801	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0016532	GO:GO:0030001	GO:GO:0030234	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	InterPro:IPR036423	EnsemblPlants:OQU82186	ProteinID:OQU82186	ProteinID:OQU82186.1	PFAM:PF00080
PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR10003	PANTHER:PTHR10003:SF27	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone
InterPro:SOD_Cu_Zn_dom	EnsemblPlantsGene:SORBI_3006G185700	SUPFAM:SSF49329	SUPFAM:SSF55008	UniParc:UPI000B8BA8B2	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:54080047..54084595

Molecular Weight (calculated)

25980.9 Da

IEP (calculated)

4.837

GRAVY (calculated)

-0.102

Length

246 amino acids

Sequence
(BLAST)

001: MATAAAAAAD LSAPDKQDSA LPELTTEFMV DMKCEGCVTA VKNKLQTLEG IKNIEVDLSN QVVRVLGSLP VKTMLDALHQ TGRDARLIGQ GNPNDFLVSA
101: AVAEFKGPVI FGVVRLAQVN MELARVEATF SGLSPGKHGW SINQFGDLTR GAESTGNVYN PPDHLSNKPL GDLGTLEAGE NGEAHFSGPK EKLRVVDLIG
201: RSIALYATED RSDPGIAAAV IARSAGVGEN YKKLCTCDGV TIWESS

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.