Factsheet for GSMUA_Achr4P24900_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

cytosol: 27023517
plastid: 27023517

gfp PMID: 27023517 doi

X Feng, F Chen, W Liu, MK Thu, Z Zhang, Y Chen, C Cheng, Y Lin, T Wang, Z Lai

Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China. 13459404515@163.com., Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China. 13559216985@163.com., Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China. buliang84@163.com., Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China. cyk68@163.com., Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China. fengxin1506@163.com., Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China. laizx01@163.com., Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China. ld0532cheng@126.com., Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China. mktstar@gmail.com., Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China. tianchi.wang@plantandfood.co.nz., Institute of Horticultural Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China. zhangzihao863@126.com.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr7P08380_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	GSMUA_Achr10P...	AT3G15660.1	21798944
AT1G12520.1	GSMUA_Achr7P08380_001	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026069_P001	Maize	cytosol	27.76	79.05
OQU82186	Sorghum	cytosol	62.21	75.61
HORVU2Hr1G094650.1	Barley	extracellular	58.86	72.73
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	59.53	70.36
Zm00001d002611_P002	Maize	plastid	66.22	64.29
KRH57335	Soybean	plastid	63.88	62.83
TraesCS2D01G396500.1	Wheat	plastid	63.55	61.49
TraesCS2A01G399000.1	Wheat	plastid	63.55	61.09
Os04t0573200-01	Rice	plastid	62.88	60.26
TraesCS2B01G417000.1	Wheat	plastid	61.87	60.06
Solyc08g079830.2.1	Tomato	plastid	59.87	57.56
PGSC0003DMT400009994	Potato	plastid	59.53	57.05
CDY26568	Canola	plastid	60.2	56.78
CDY16008	Canola	plastid	60.2	56.6
CDY58614	Canola	plastid	58.86	55.35
CDY21055	Canola	plastid	58.53	55.2
Bra016768.1-P	Field mustard	plastid	58.19	55.06
AT1G12520.1	Thale cress	plastid	58.86	55.0
CDY39819	Canola	plastid	35.45	48.4
Bra036642.1-P	Field mustard	plastid	35.45	48.4
CDY03250	Canola	plastid	35.12	47.95
Bra026968.1-P	Field mustard	cytosol	59.87	35.52

Protein Annotations

Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006801	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016532
GO:GO:0030001	GO:GO:0030234	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr4G24900_001	EnsemblPlants:GSMUA_Achr4P24900_001	EnsemblPlants:GSMUA_Achr4T24900_001
InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	InterPro:IPR036423	UniProt:M0SRV1	PFAM:PF00080
PFAM:PF00403	PFscan:PS50846	PFscan:PS51257	PANTHER:PTHR10003	PANTHER:PTHR10003:SF27	InterPro:SOD-like_Cu/Zn_dom_sf
InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	SUPFAM:SSF55008	SignalP:SignalP-noTM	UniParc:UPI000296F750
SEG:seg	:	:	:	:	:

Description

Putative Copper chaperone for superoxide dismutase [Source:GMGC_GENE;Acc:GSMUA_Achr4G24900_001]

Coordinates

chr4:+:24573040..24577797

Molecular Weight (calculated)

31531.9 Da

IEP (calculated)

5.172

GRAVY (calculated)

0.104

Length

299 amino acids

Sequence
(BLAST)

001: MVAVLKILSV SSLPVAIAAL TLSSSSCSYS PFPTKLPISL RTASATRRLP FAALRMDSSA TELKPSAVQQ DGVLPELMTE FMVDMKCEGC VSAVKDNLLK
101: LDGIKNVDVD LSNQVVRVLG SIPVKDMEDA LAHTGRNARL VGQGNPNDFL VSAAVAEFKG PVIYGVVRLA QVSMELARIE ASFSGLSPGK HAWSINEFGD
201: LTKGAASTGK NFNPPDHISE TPLGDLGTLE ALGTGEANFS GSKAMIRVAD LIGRSIVIYE TEDKSDPGIT AAVIARSAGV GENYKKICTC DGVTIWESN

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.