Factsheet for Bra026968.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021125.1-P
Bra027220.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	Bra021125.1-P	AT3G15660.1	21798944
AT1G12520.1	Bra027220.1-P	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26568	Canola	plastid	57.54	91.48
CDY16008	Canola	plastid	57.34	90.88
AT1G12520.1	Thale cress	plastid	52.58	82.81
Bra016768.1-P	Field mustard	plastid	51.59	82.28
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	35.91	71.54
Zm00001d026069_P001	Maize	cytosol	14.48	69.52
KRH57335	Soybean	plastid	41.07	68.09
OQU82186	Sorghum	cytosol	33.13	67.89
Solyc08g079830.2.1	Tomato	plastid	40.28	65.27
PGSC0003DMT400009994	Potato	plastid	40.28	65.06
HORVU2Hr1G094650.1	Barley	extracellular	31.15	64.88
GSMUA_Achr4P24900_001	Banana	plastid	35.52	59.87
Zm00001d002611_P002	Maize	plastid	35.52	58.12
TraesCS2D01G396500.1	Wheat	plastid	35.52	57.93
Bra036642.1-P	Field mustard	plastid	25.0	57.53
TraesCS2A01G399000.1	Wheat	plastid	35.12	56.91
TraesCS2B01G417000.1	Wheat	plastid	34.72	56.82
Os04t0573200-01	Rice	plastid	34.72	56.09

Protein Annotations

Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	EnsemblPlantsGene:Bra026968	EnsemblPlants:Bra026968.1	EnsemblPlants:Bra026968.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0006801	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
InterPro:IPR036423	UniProt:M4EDV8	PFAM:PF00080	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR10003
PANTHER:PTHR10003:SF27	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	SUPFAM:SSF55008
UniParc:UPI000254288B	SEG:seg	:	:	:	:

Description

AT1G12520 (E=2e-135) ATCCS | ATCCS (COPPER CHAPERONE FOR SOD1); superoxide dismutase/ superoxide dismutase copper chaperone

Coordinates

chrA09:+:34525006..34527962

Molecular Weight (calculated)

54737.6 Da

IEP (calculated)

5.093

GRAVY (calculated)

-0.431

Length

504 amino acids

Sequence
(BLAST)

001: MAMAPPRRKI SKEEVIEKLK DDGDFDSLRL KIIRRLKDNE ELRNKMISVV KESRALNRPD AQTMKTRQLS DAIFQEVGSK MLSQLSDGLW GIIRSEDGMK
101: NEIRDTVQSV YTTLSNPGGV QEVKPSTRES EHNIPTSSSL LHLGNEFGPS SKQKQELIYV QENKGEAACS SSTNNRVSYT DHNNNINCDD DEDPELPPVA
201: TTTAASAIPI AIAFSSSSSS SPTNPNPQSL NFSRPSPRGL GLARSFASSP MTTVPASDSN LSQEDGVMPQ LLTEFMVNMK CEGCVNAVKS KLETIEGIEK
301: VDVDLANQVV RILGSSPVKT MSQALEQTGR KARLIGQGVP QDFLVSAAVA EFKGPDIFGV VRFAQVSMEL ARIEANFTGL SPGNHSWSIN EYGDLTNGAA
401: STGNLYNPFE DHTITEPLGD LGTLEADQSG EAFYSGKKEK LKVADLIGRA VVVYKTEDKK LGPRLTAAVI ARSAGVGENY KKLCTCDGTV IWEATNSDFM
501: TSKV

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.