Factsheet for HORVU2Hr1G094650.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
MultiLoc:	extracellular
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G023970.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	HORVU3Hr1G023970.2	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026069_P001	Maize	cytosol	37.6	86.67
OQU82186	Sorghum	cytosol	84.3	82.93
TraesCS2D01G396500.1	Wheat	plastid	90.5	70.87
TraesCS2A01G399000.1	Wheat	plastid	90.91	70.74
TraesCS2B01G417000.1	Wheat	plastid	87.6	68.83
Zm00001d002611_P002	Maize	plastid	85.54	67.21
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	69.01	66.01
Os04t0573200-01	Rice	plastid	84.71	65.71
GSMUA_Achr4P24900_001	Banana	plastid	72.73	58.86
KRH57335	Soybean	plastid	70.66	56.25
Solyc08g079830.2.1	Tomato	plastid	69.01	53.7
PGSC0003DMT400009994	Potato	plastid	67.77	52.56
Bra016768.1-P	Field mustard	plastid	68.18	52.22
CDY21055	Canola	plastid	68.18	52.05
CDY58614	Canola	plastid	68.18	51.89
CDY16008	Canola	plastid	66.94	50.94
CDY26568	Canola	plastid	66.12	50.47
AT1G12520.1	Thale cress	plastid	66.53	50.31
CDY39819	Canola	plastid	42.56	47.03
CDY03250	Canola	plastid	42.56	47.03
Bra036642.1-P	Field mustard	plastid	42.56	47.03
Bra026968.1-P	Field mustard	cytosol	64.88	31.15

Protein Annotations

Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	UniProt:A0A287J045	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006801	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0016532	GO:GO:0030001	GO:GO:0030234	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
EnsemblPlantsGene:HORVU2Hr1G094650	EnsemblPlants:HORVU2Hr1G094650.1	InterPro:IPR006121	InterPro:IPR036423	PFAM:PF00080	PFAM:PF00403
PFscan:PS50846	PANTHER:PTHR10003	PANTHER:PTHR10003:SF27	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom
SUPFAM:SSF49329	SUPFAM:SSF55008	UniParc:UPI000B477595	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr2H:+:665638474..665642728

Molecular Weight (calculated)

26031.3 Da

IEP (calculated)

4.762

GRAVY (calculated)

0.007

Length

242 amino acids

Sequence
(BLAST)

001: MGLFILAEVG LFRFIKTPVF ETEFMVDMKC EGCVTAVKNR LQTLEGIQNI EVDLNNQVVR VRGSLPVKIM LDALHQTGRD ARLIGQGNPD DFLVSAAVAE
101: FKGPVIFGVV RLAQVNMELA RVEATFSGLS PGKHGWSINE FGDLTKGAES TGKVYNPPDY LSEKPLGDLG ILEAGENGEA QFSGSKEKLK VVDLIGRSIA
201: LYATEDKSDS GIAAAVVARS AGVGENYKKL CTCDGVTIWE SS

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.