Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016768.1-P | Field mustard | plastid | 86.88 | 87.97 |
| CDY58614 | Canola | plastid | 87.19 | 87.74 |
| CDY21055 | Canola | plastid | 86.88 | 87.7 |
| CDY26568 | Canola | plastid | 85.31 | 86.12 |
| CDY16008 | Canola | plastid | 84.06 | 84.59 |
| VIT_02s0025g04830.t01 | Wine grape | cytosol, peroxisome, plastid | 57.5 | 72.73 |
| Zm00001d026069_P001 | Maize | cytosol | 23.75 | 72.38 |
| KRH57335 | Soybean | plastid | 66.56 | 70.07 |
| OQU82186 | Sorghum | cytosol | 52.81 | 68.7 |
| HORVU2Hr1G094650.1 | Barley | extracellular | 50.31 | 66.53 |
| Solyc08g079830.2.1 | Tomato | plastid | 62.81 | 64.63 |
| PGSC0003DMT400009994 | Potato | plastid | 62.81 | 64.42 |
| Zm00001d002611_P002 | Maize | plastid | 58.44 | 60.71 |
| TraesCS2D01G396500.1 | Wheat | plastid | 57.81 | 59.87 |
| GSMUA_Achr4P24900_001 | Banana | plastid | 55.0 | 58.86 |
| TraesCS2A01G399000.1 | Wheat | plastid | 56.88 | 58.52 |
| TraesCS2B01G417000.1 | Wheat | plastid | 55.94 | 58.12 |
| Os04t0573200-01 | Rice | plastid | 55.94 | 57.37 |
| Bra026968.1-P | Field mustard | cytosol | 82.81 | 52.58 |
Protein Annotations
| Gene3D:2.60.40.200 | Gene3D:3.30.70.100 | MapMan:35.1 | EntrezGene:837808 | ProteinID:AAF79650.1 | ProteinID:AAF88100.1 |
| ProteinID:AEE28891.1 | ProteinID:AEE28892.1 | ProteinID:AEE28893.1 | EMBL:AF179371 | EMBL:AK175663 | EMBL:AK176660 |
| EMBL:AK221656 | ArrayExpress:AT1G12520 | EnsemblPlantsGene:AT1G12520 | RefSeq:AT1G12520 | TAIR:AT1G12520 | RefSeq:AT1G12520-TAIR-G |
| EnsemblPlants:AT1G12520.1 | TAIR:AT1G12520.1 | Symbol:ATCCS | EMBL:AY050357 | EMBL:AY094034 | Unigene:At.10574 |
| EMBL:DQ003058 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006801 | GO:GO:0006810 | GO:GO:0006878 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009987 |
| GO:GO:0016532 | GO:GO:0019725 | GO:GO:0030001 | GO:GO:0030234 | GO:GO:0043085 | GO:GO:0046872 |
| InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 | InterPro:IPR036423 | RefSeq:NP_001031029.1 | RefSeq:NP_001031030.1 |
| RefSeq:NP_563910.2 | PFAM:PF00080 | PFAM:PF00403 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50846 | PANTHER:PTHR10003 | PANTHER:PTHR10003:SF27 |
| UniProt:Q9LD47 | InterPro:SOD-like_Cu/Zn_dom_sf | InterPro:SOD_Cu/Zn_/chaperone | InterPro:SOD_Cu_Zn_dom | SUPFAM:SSF49329 | SUPFAM:SSF55008 |
| UniParc:UPI00000A01BF | SEG:seg | : | : | : | : |
Description
CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
Coordinates
chr1:-:4267074..4268982
Molecular Weight (calculated)
33853.2 Da
IEP (calculated)
5.459
GRAVY (calculated)
-0.045
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.