CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97692
CDY20141
CDY21857
CDY30094

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	CDX97692	AT3G15660.1	21798944
AT1G12520.1	CDY20141	AT3G15660.1	21798944
AT1G12520.1	CDY21857	AT3G15660.1	21798944
AT1G12520.1	CDY30094	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26568	Canola	plastid	94.03	94.32
CDY58614	Canola	plastid	84.91	84.91
CDY21055	Canola	plastid	83.96	84.23
AT1G12520.1	Thale cress	plastid	84.59	84.06
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	56.92	71.54
Zm00001d026069_P001	Maize	cytosol	23.27	70.48
KRH57335	Soybean	plastid	66.98	70.07
OQU82186	Sorghum	cytosol	52.52	67.89
HORVU2Hr1G094650.1	Barley	extracellular	50.94	66.94
Solyc08g079830.2.1	Tomato	plastid	65.09	66.56
PGSC0003DMT400009994	Potato	plastid	64.78	66.03
CDY39819	Canola	plastid	42.14	61.19
CDY03250	Canola	plastid	42.14	61.19
GSMUA_Achr4P24900_001	Banana	plastid	56.6	60.2
Zm00001d002611_P002	Maize	plastid	57.55	59.42
TraesCS2D01G396500.1	Wheat	plastid	57.23	58.9
TraesCS2A01G399000.1	Wheat	plastid	56.6	57.88
TraesCS2B01G417000.1	Wheat	plastid	55.97	57.79
Bra026968.1-P	Field mustard	cytosol	90.88	57.34
Os04t0573200-01	Rice	plastid	55.35	56.41

Protein Annotations

Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	GO:A0A078FUG7	UniProt:A0A078FUG7	EnsemblPlants:CDY16008
ProteinID:CDY16008	ProteinID:CDY16008.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006801	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016532	GO:GO:0030001	GO:GO:0030234
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00090394001	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	InterPro:IPR036423
PFAM:PF00080	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR10003	PANTHER:PTHR10003:SF27	MetaCyc:PWY-6854
InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	SUPFAM:SSF55008	UniParc:UPI0004EE71B5
SEG:seg	:	:	:	:	:

Description

BnaC08g41150DBnaC08g41150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUG7]

Coordinates

chrLK032060:-:173754..175389

Molecular Weight (calculated)

33582.8 Da

IEP (calculated)

4.693

GRAVY (calculated)

-0.026

Length

318 amino acids

Sequence
(BLAST)

001: MAFILRSVAT TTATVVAASA ILNAIAFSSS SSSSPTNLEP QSLNFSRPSP RGLGLARSFA SSPMTTVPAS DSSNLSQEDG VMPQLLTEFM VDMKCEGCVN
101: AVKSKLETIE GIEKVDMDLA NQVVRILGSS PVKTMSLALE QTSRKARLIG QGVPQDFLVS AAVAEFKGPD IFGVVRFAQV SMELARIEAN FTGLSPGNHS
201: WSINEYGDLT NGAASTGNLY NPFQDPTITE PLGDLGTLEA DQSGEAFYSG KKEKLKVADL IGRALVVYKT EDKKSGPGLT AAVIARSAGV GENYKKLCTC
301: DGTVIWEATN SDFVTSSV

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.