Factsheet for Zm00001d002611_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008736_P001
Zm00001d025657_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	Zm00001d008736_P001	AT3G15660.1	21798944
AT1G12520.1	Zm00001d025657_P001	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82186	Sorghum	cytosol	75.65	94.72
Zm00001d026069_P001	Maize	cytosol	31.17	91.43
HORVU2Hr1G094650.1	Barley	extracellular	67.21	85.54
Os04t0573200-01	Rice	plastid	82.47	81.41
TraesCS2A01G399000.1	Wheat	plastid	80.84	80.06
TraesCS2D01G396500.1	Wheat	plastid	80.19	79.94
TraesCS2B01G417000.1	Wheat	plastid	78.25	78.25
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	58.12	70.75
GSMUA_Achr4P24900_001	Banana	plastid	64.29	66.22
KRH57335	Soybean	plastid	63.96	64.8
Solyc08g079830.2.1	Tomato	plastid	62.34	61.74
PGSC0003DMT400009994	Potato	plastid	61.36	60.58
Bra016768.1-P	Field mustard	plastid	61.36	59.81
CDY21055	Canola	plastid	61.36	59.62
CDY58614	Canola	plastid	61.04	59.12
AT1G12520.1	Thale cress	plastid	60.71	58.44
CDY16008	Canola	plastid	59.42	57.55
CDY26568	Canola	plastid	59.09	57.41
CDY39819	Canola	plastid	36.04	50.68
CDY03250	Canola	plastid	35.71	50.23
Bra036642.1-P	Field mustard	plastid	35.71	50.23
Bra026968.1-P	Field mustard	cytosol	58.12	35.52

Protein Annotations

Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	UniProt:A0A1D6E272	GO:GO:0003674	GO:GO:0005488
GO:GO:0006801	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030001
GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	InterPro:IPR036423	ProteinID:ONM14757.1
PFAM:PF00080	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR10003	PANTHER:PTHR10003:SF27	InterPro:SOD-like_Cu/Zn_dom_sf
InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	SUPFAM:SSF55008	SignalP:SignalP-noTM	UniParc:UPI0002210F93
EnsemblPlantsGene:Zm00001d002611	EnsemblPlants:Zm00001d002611_P002	EnsemblPlants:Zm00001d002611_T002	SEG:seg	:	:

Description

Copper chaperone for superoxide dismutase

Coordinates

chr2:-:16718233..16722717

Molecular Weight (calculated)

32111.1 Da

IEP (calculated)

5.173

GRAVY (calculated)

-0.008

Length

308 amino acids

Sequence
(BLAST)

001: MVGFLRAFAA ASAVPAAAAA AYALFSSSAP SSSKLRFPLP DSFLSAAASS TSGRAPNAVP PMATAAATAD LSAADDKQRD SALPELTTEF MVDMKCEGCV
101: TAVKNKLQTL EGIKNIEVDL SNQVVRVLGS LPVKTMLDAL HQTGRDARLI GQGNPNDFLV SAAVAEFKGP VVFGVVRLAQ VNMELARVEA TFSGLSPGKH
201: GWSINQFGDL TRGAESTGNV YNPPDHLSDK PLGDLGTLEA GENGEAHFSG PKEKLRVVDL IGRSIALYAT EDRSDPGIAA AVIARSAGVG ENYKKLCTCD
301: GVTIWESS

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.