CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39819	Canola	plastid	96.35	96.35
CDY58614	Canola	plastid	64.84	44.65
CDY21055	Canola	plastid	64.38	44.48
HORVU2Hr1G094650.1	Barley	extracellular	47.03	42.56
CDY16008	Canola	plastid	61.19	42.14
CDY26568	Canola	plastid	60.73	41.96
OQU82186	Sorghum	cytosol	46.58	41.46
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	45.66	39.53
KRH57335	Soybean	plastid	54.34	39.14
Solyc08g079830.2.1	Tomato	plastid	52.97	37.3
TraesCS2D01G396500.1	Wheat	plastid	52.51	37.22
PGSC0003DMT400009994	Potato	plastid	52.97	37.18
TraesCS2A01G399000.1	Wheat	plastid	52.05	36.66
Zm00001d002611_P002	Maize	plastid	50.23	35.71
TraesCS2B01G417000.1	Wheat	plastid	49.77	35.39
GSMUA_Achr4P24900_001	Banana	plastid	47.95	35.12
Os04t0573200-01	Rice	plastid	49.77	34.94
Zm00001d026069_P001	Maize	cytosol	10.96	22.86

Protein Annotations

Gene3D:2.60.40.200	MapMan:35.1	GO:A0A078EMN7	EnsemblPlants:CDY03250	ProteinID:CDY03250	ProteinID:CDY03250.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0006801	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016532	GO:GO:0030234	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00115784001	InterPro:IPR036423	PFAM:PF00080
PANTHER:PTHR10003	PANTHER:PTHR10003:SF27	MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone	InterPro:SOD_Cu_Zn_dom
SUPFAM:SSF49329	UniParc:UPI0004EE06B1	SEG:seg	:	:	:

Description

BnaC09g10980D

Coordinates

chrLK031942:+:43207..44292

Molecular Weight (calculated)

23726.2 Da

IEP (calculated)

7.340

GRAVY (calculated)

-0.143

Length

219 amino acids

Sequence
(BLAST)

001: MMSFLRSVAT IPRAASATPT EISLHSFSST KPQTFPFPSS HRSSPRLRWG YTRIFARSPM ACVPQVSATA VSEFKGPNIF GVVRFVQISM EIVRIEASFG
101: GLSPGKHSWC INEYGDLTKG AASTGNIYNP LQDDQTATQL PGDLGTLEAD QNGEALYTVT KEKMKVTDLI GRAVVVYETE DRSLQGITAA VVARSGEVGE
201: SCRKLCSCDG TTVWEATVY

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.