CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036642.1-P	Field mustard	plastid	98.63	98.63
CDY03250	Canola	plastid	96.35	96.35
CDY58614	Canola	plastid	64.84	44.65
CDY21055	Canola	plastid	64.38	44.48
HORVU2Hr1G094650.1	Barley	extracellular	47.03	42.56
CDY16008	Canola	plastid	61.19	42.14
CDY26568	Canola	plastid	60.73	41.96
OQU82186	Sorghum	cytosol	47.03	41.87
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	46.12	39.92
KRH57335	Soybean	plastid	54.79	39.47
Solyc08g079830.2.1	Tomato	plastid	53.42	37.62
TraesCS2D01G396500.1	Wheat	plastid	52.97	37.54
PGSC0003DMT400009994	Potato	plastid	53.42	37.5
TraesCS2A01G399000.1	Wheat	plastid	52.51	36.98
Zm00001d002611_P002	Maize	plastid	50.68	36.04
Os04t0573200-01	Rice	plastid	51.14	35.9
TraesCS2B01G417000.1	Wheat	plastid	50.23	35.71
GSMUA_Achr4P24900_001	Banana	plastid	48.4	35.45
Zm00001d026069_P001	Maize	cytosol	11.42	23.81

Protein Annotations

Gene3D:2.60.40.200	MapMan:35.1	GO:A0A078HR74	UniProt:A0A078HR74	EnsemblPlants:CDY39819	ProteinID:CDY39819
ProteinID:CDY39819.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006801	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016532	GO:GO:0030234	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00068633001	InterPro:IPR036423
PFAM:PF00080	PANTHER:PTHR10003	PANTHER:PTHR10003:SF27	MetaCyc:PWY-6854	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone
InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	UniParc:UPI0004EEE6F3	:	:	:

Description

BnaA09g10710DBnaA09g10710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HR74]

Coordinates

chrLK032457:-:302552..303593

Molecular Weight (calculated)

23626.1 Da

IEP (calculated)

7.340

GRAVY (calculated)

-0.130

Length

219 amino acids

Sequence
(BLAST)

001: MMSFLRSVAT IPRAASATPT ESSLHSFSST KPQTFPFPSS HRSLPRLRWG YKRIFASSPM ACVPQVSATA VSEFKGPAIF GVVRFVQISM ENVIIEASFG
101: GLSPGKHSWC INEYGDLTKG AASTGNIYNP LQDDQTATQL PGDLGTLEAD QNGEALYTVK KEKMKVTDLI GRAVVVYETE DRSLQGITAA VVARSGEVGE
201: SCRKLCSCDG TTVWEATVY

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.