CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	plastid
PTS1:	peroxisome
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH23549
KRH44417
KRH47491

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12520.1	KRH23549	AT3G15660.1	21798944
AT1G12520.1	KRH44417	AT3G15660.1	21798944
AT1G12520.1	KRH47491	AT3G15660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g04830.t01	Wine grape	cytosol, peroxisome, plastid	65.79	79.05
Zm00001d026069_P001	Maize	cytosol	25.99	75.24
OQU82186	Sorghum	cytosol	59.54	73.58
PGSC0003DMT400009994	Potato	plastid	73.03	71.15
Solyc08g079830.2.1	Tomato	plastid	72.7	71.06
HORVU2Hr1G094650.1	Barley	extracellular	56.25	70.66
CDY58614	Canola	plastid	70.72	67.61
CDY21055	Canola	plastid	70.39	67.51
Bra016768.1-P	Field mustard	plastid	70.07	67.41
CDY16008	Canola	plastid	70.07	66.98
AT1G12520.1	Thale cress	plastid	70.07	66.56
CDY26568	Canola	plastid	69.08	66.25
Zm00001d002611_P002	Maize	plastid	64.8	63.96
GSMUA_Achr4P24900_001	Banana	plastid	62.83	63.88
TraesCS2D01G396500.1	Wheat	plastid	63.82	62.78
TraesCS2A01G399000.1	Wheat	plastid	63.49	62.06
Os04t0573200-01	Rice	plastid	63.49	61.86
TraesCS2B01G417000.1	Wheat	plastid	62.17	61.36
CDY39819	Canola	plastid	39.47	54.79
Bra036642.1-P	Field mustard	plastid	39.47	54.79
CDY03250	Canola	plastid	39.14	54.34
Bra026968.1-P	Field mustard	cytosol	68.09	41.07

Protein Annotations

Gene3D:2.60.40.200	Gene3D:3.30.70.100	MapMan:35.1	EntrezGene:547617	EMBL:ACUP02002826	EMBL:AF329816
EnsemblPlantsGene:GLYMA_05G055000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006801	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016532	GO:GO:0030001	GO:GO:0030234
GO:GO:0043085	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121	InterPro:IPR036423
EnsemblPlants:KRH57335	ProteinID:KRH57335	ProteinID:KRH57335.1	PFAM:PF00080	PFAM:PF00403	PFscan:PS50846
PANTHER:PTHR10003	PANTHER:PTHR10003:SF27	MetaCyc:PWY-6854	UniProt:Q9BBU5	InterPro:SOD-like_Cu/Zn_dom_sf	InterPro:SOD_Cu/Zn_/chaperone
InterPro:SOD_Cu_Zn_dom	SUPFAM:SSF49329	SUPFAM:SSF55008	SignalP:SignalP-noTM	UniParc:UPI000008CEBB	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:4996741..5000836

Molecular Weight (calculated)

32480.7 Da

IEP (calculated)

5.456

GRAVY (calculated)

-0.138

Length

304 amino acids

Sequence
(BLAST)

001: MAFLRSIATT AIATIPAALA FSSSSSSSFP RSSQSPNPQN RLGLVKTLAT PPSALHMDHK LSSQPDAVLP ELLTEFMVDM KCEGCVNAVK NKLNEINGVK
101: NVEVDLSNQV VRILGSTPVK TMTEALEQTG RKARLIGQGV PEDFLISAAV SEFKGPDIFG VVRLAQVNME LARIEANFSG LSPGKHGWSI NEFGDLTRGA
201: ASTGKMFNPV NEENSKEPLG DLGTLEANEK GEAFYSGVKE KLRVADLIGR SVVVYATEDK SEHGITAAVI ARSAGVGENY KKLCTCDGTT IWEATDTDFV
301: TSKV

Best Arabidopsis Sequence Match ( AT1G12520.1 )
(BLAST)

001: MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR SFVSSPMATA LTSDRNLHQE DRAMPQLLTE FMVDMTCEGC
101: VNAVKNKLET IEGIEKVEVD LSNQVVRILG SSPVKAMTQA LEQTGRKARL IGQGVPQDFL VSAAVAEFKG PDIFGVVRFA QVSMELARIE ANFTGLSPGT
201: HSWCINEYGD LTNGAASTGS LYNPFQDQTG TEPLGDLGTL EADKNGEAFY SGKKEKLKVA DLIGRAVVVY KTDDNKSGPG LTAAVIARSA GVGENYKKLC
301: SCDGTVIWEA TNSDFVASKV

Arabidopsis Description

CCSCopper chaperone for superoxide dismutase, chloroplastic/cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.