CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02231
KRH06004
KRH12132
KRH17506
KRH37127
KRH43388
KRH50884
KRH59529

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15660.1	KRH02231	AT4G15730.1	21798944
AT3G15660.1	KRH12132	AT4G15730.1	21798944
AT3G15660.1	KRH37127	AT4G15730.1	21798944
AT3G15660.1	KRH50884	AT4G15730.1	21798944
AT3G15660.1	KRH43388	AT5G09830.1	21798944
AT3G15660.1	KRH59529	AT5G09830.1	21798944
AT3G15660.1	KRH06004	AT5G42220.1	21798944
AT3G15660.1	KRH17506	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44417	Soybean	cytosol, plastid	81.48	81.99
KRH09770	Soybean	cytosol	26.54	81.13
KRH47491	Soybean	cytosol, plastid	79.63	80.12
VIT_09s0002g06040.t01	Wine grape	mitochondrion	72.22	68.82
AT3G15660.1	Thale cress	mitochondrion	67.28	64.5
CDY30094	Canola	mitochondrion	64.81	63.64
Solyc06g067960.2.1	Tomato	plastid	66.67	63.53
Bra027220.1-P	Field mustard	mitochondrion	66.67	63.16
CDX97692	Canola	mitochondrion	66.67	63.16
PGSC0003DMT400073383	Potato	mitochondrion	65.43	62.35
CDY21857	Canola	mitochondrion	62.96	61.08
Bra021125.1-P	Field mustard	mitochondrion	62.35	60.48
CDY20141	Canola	mitochondrion	61.73	59.88
Zm00001d008736_P001	Maize	mitochondrion	51.23	49.7
Os01t0530400-01	Rice	mitochondrion	56.17	49.19
KXG31737	Sorghum	mitochondrion	56.17	49.19
Os01t0174900-01	Rice	mitochondrion	53.09	46.49
TraesCS3D01G128900.1	Wheat	mitochondrion	50.62	44.32
TraesCS3A01G127900.1	Wheat	mitochondrion	51.23	43.92
EES12336	Sorghum	mitochondrion	50.0	42.63
GSMUA_Achr10P...	Banana	mitochondrion	50.0	42.19
Zm00001d025657_P001	Maize	mitochondrion	49.38	41.45
TraesCS3B01G147100.1	Wheat	mitochondrion	50.62	37.27
GSMUA_Achr7P08380_001	Banana	plastid	57.41	34.19
HORVU3Hr1G023970.2	Barley	cytosol	51.23	32.05
KRH40339	Soybean	cytosol	3.09	29.41
KRH40338	Soybean	plastid	28.4	28.93
KRH00894	Soybean	plastid	30.25	27.68
KRH65709	Soybean	nucleus, plastid	29.63	16.27
KRH75953	Soybean	nucleus	29.63	15.0
KRH20463	Soybean	nucleus	29.01	9.59

Protein Annotations

EntrezGene:100306093	Gene3D:3.40.30.10	MapMan:35.1	EMBL:ACUP02008474	EMBL:BT090030	UniProt:C6SXY3
EnsemblPlantsGene:GLYMA_13G363100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109
EnsemblPlants:KRH23549	ProteinID:KRH23549	ProteinID:KRH23549.1	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354
PANTHER:PTHR10293	PANTHER:PTHR10293:SF54	SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI0001890D12

Description

hypothetical protein

Coordinates

chr13:-:45007659..45010856

Molecular Weight (calculated)

18077.6 Da

IEP (calculated)

6.253

GRAVY (calculated)

-0.266

Length

162 amino acids

Sequence
(BLAST)

001: MTTSLSSILF KGIAARSFTA PLTRSCYHGM RYFATVSNDP DTHDDFKPAN KLENSNISLA DVIEQDVKDN PVMIYMKGVP DFPQCGFSSL AVRVLQQYDV
101: PLSARNILED PELKNAVKAF SNWPTFPQVF IKGEFIGGSD IVLNMHQTGD LKEKLKDITS KQ

Best Arabidopsis Sequence Match ( AT3G15660.2 )
(BLAST)

001: MAASLSSRLI KGIANLKAVR SSRLTSASVY QNGMMRFSST VPSDSDTHDD FKPTQKVPPD STDSLKDIVE NDVKDNPVMI YMKGVPESPQ CGFSSLAVRV
101: LQQYNVPISS RNILEDQELK NAVKSFSHWP TFPQIFIKGE FIGGSDIILN MHKEGELEQK LKDVSGNQD

Arabidopsis Description

GRXS15GRX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.