Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH17506 | Soybean | nucleus | 89.26 | 89.64 |
| CDX95199 | Canola | nucleus | 17.66 | 47.98 |
| Solyc04g082160.2.1 | Tomato | nucleus | 42.13 | 46.21 |
| VIT_09s0054g01880.t01 | Wine grape | nucleus | 45.96 | 45.71 |
| CDY42355 | Canola | nucleus | 39.26 | 45.11 |
| Bra027974.1-P | Field mustard | nucleus | 39.36 | 45.01 |
| AT5G42220.1 | Thale cress | nucleus | 39.36 | 42.09 |
| CDX95198 | Canola | nucleus | 19.57 | 39.74 |
| PGSC0003DMT400025616 | Potato | plastid | 28.4 | 39.5 |
| TraesCS6A01G013800.1 | Wheat | plastid | 5.43 | 32.9 |
| GSMUA_Achr5P18990_001 | Banana | cytosol | 34.04 | 31.13 |
| Os07t0498800-01 | Rice | cytosol | 20.43 | 28.66 |
| KXG25466 | Sorghum | nucleus | 27.98 | 27.77 |
| TraesCS6B01G020900.1 | Wheat | nucleus | 27.98 | 27.0 |
| Zm00001d052721_P001 | Maize | plasma membrane | 25.96 | 26.96 |
| TraesCS6A01G013700.2 | Wheat | nucleus | 27.77 | 26.93 |
| TraesCS6D01G017100.2 | Wheat | nucleus | 27.98 | 26.84 |
| KRH03572 | Soybean | nucleus | 18.94 | 24.9 |
| HORVU6Hr1G002580.6 | Barley | plastid | 27.87 | 24.69 |
Protein Annotations
| EntrezGene:100783611 | Gene3D:3.10.20.90 | MapMan:35.1 | EMBL:ACUP02010789 | EnsemblPlantsGene:GLYMA_17G261600 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000626 | UniProt:K7MP42 | EnsemblPlants:KRH06004 | ProteinID:KRH06004 |
| ProteinID:KRH06004.1 | ProteinID:KRH06005.1 | ProteinID:KRH06006.1 | PFAM:PF00240 | PRINTS:PR00348 | PFscan:PS50053 |
| PANTHER:PTHR15204 | PANTHER:PTHR15204:SF5 | SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI00029569E4 | InterPro:Ubiquitin |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr17:-:41539602..41548287
Molecular Weight (calculated)
98811.9 Da
IEP (calculated)
5.114
GRAVY (calculated)
-0.458
Length
940 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQSSNEGS STGNISAECS DSTVQLNIKT LDSRIYSFQV DKNMPVSLFK EKIANEIGVP VNQQRLIFRG KVLKDEHALS EYYVENGHTL HLVERQPNQS
101: QASGTSSGES TGTSGNRGND VGSGAPRNHV GQISHSVVLG TFNVGEQGEG IVHDLTRVIG HVLNSIGNGG QSTLSGPNAT QTSSVHPWNE TEGMHAGNQN
201: SAGNQAPSGQ TFHGPTVQSV SHVVQIPVAA GAIPIPSLNA PIPDSLNTLS EFMNRMEQTL TQNGYQSNLS SANPGDQQAE LPSNAQGLPT LEALSTVLHS
301: AERLLGGQAV AALSHIAGRL EREGTSADLR VRDQIQSESV QIGLAMQHLG ALLLELGRTM LTLRMGQSSA ESVVNTGPAV YISPSGPNPI MVQPFPLQTS
401: SLFGGPVPPS TPATLGTIGI GNAPRNVNIH IHAGTSLAPI VSAIGSGANN GEGTRSEHRN EPGSGDSGST RVLPVRNVIA ATIPSHPPGV GISSSTQTGF
501: GIPTSQPPSD SASLSSVLAE INSRLRNVVG NMHGDNTVPS GQMESNSRDL PSGSESRPAT VNEQRDTMDM NGFGATSASS VGCTSESEVQ KLQTKAVQTS
601: SNDERDVLVD KFVSSSSNQD LRSCSSGETI VKPEKEQDVP AVSERQNVTE PAKAAPLGLG VGGLERKRRT RLQPPVSKGA DDRSSSSSAN QNQQTRTDGQ
701: HILQTLASHG SGLNSRNANG PSQRSLPSSD RPIDVAGLMS QALRSPALNG LLEGVSQQTG VDSPDGLRNM LQQFTQSPQM MNTVNQIVQQ VGSQDVGNMF
801: AGMERGQGGG IDISRMFQQM MPIVSQALGG GNPSSLFSAE EAEPHAPYCD GTINRDEYSD NQSLQLDLQP LAERIEHLGP STDIFRAVAE NAVQLSGSGS
901: TSNDLLDELC SNESLAREYV DMLRCDVSKL LKEHSETNNV
101: QASGTSSGES TGTSGNRGND VGSGAPRNHV GQISHSVVLG TFNVGEQGEG IVHDLTRVIG HVLNSIGNGG QSTLSGPNAT QTSSVHPWNE TEGMHAGNQN
201: SAGNQAPSGQ TFHGPTVQSV SHVVQIPVAA GAIPIPSLNA PIPDSLNTLS EFMNRMEQTL TQNGYQSNLS SANPGDQQAE LPSNAQGLPT LEALSTVLHS
301: AERLLGGQAV AALSHIAGRL EREGTSADLR VRDQIQSESV QIGLAMQHLG ALLLELGRTM LTLRMGQSSA ESVVNTGPAV YISPSGPNPI MVQPFPLQTS
401: SLFGGPVPPS TPATLGTIGI GNAPRNVNIH IHAGTSLAPI VSAIGSGANN GEGTRSEHRN EPGSGDSGST RVLPVRNVIA ATIPSHPPGV GISSSTQTGF
501: GIPTSQPPSD SASLSSVLAE INSRLRNVVG NMHGDNTVPS GQMESNSRDL PSGSESRPAT VNEQRDTMDM NGFGATSASS VGCTSESEVQ KLQTKAVQTS
601: SNDERDVLVD KFVSSSSNQD LRSCSSGETI VKPEKEQDVP AVSERQNVTE PAKAAPLGLG VGGLERKRRT RLQPPVSKGA DDRSSSSSAN QNQQTRTDGQ
701: HILQTLASHG SGLNSRNANG PSQRSLPSSD RPIDVAGLMS QALRSPALNG LLEGVSQQTG VDSPDGLRNM LQQFTQSPQM MNTVNQIVQQ VGSQDVGNMF
801: AGMERGQGGG IDISRMFQQM MPIVSQALGG GNPSSLFSAE EAEPHAPYCD GTINRDEYSD NQSLQLDLQP LAERIEHLGP STDIFRAVAE NAVQLSGSGS
901: TSNDLLDELC SNESLAREYV DMLRCDVSKL LKEHSETNNV
001: MGDNGKDEIM VEASQCAGAM VEIKIKTLDS QTYTLRVDKC VPVPALKEQV ASVTGVVTEQ QRLICRGKVM KDDQLLSAYH VEDGHTLHLV VRQPVSESST
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
101: SNAAADPALS AGDSQGSQRS RVVVGSFNIA EQADGVYSDL GQIVSAVLGS LGISNPEGGI EGIDDMGPLH ERLSRSSGPG TARDSSGGRS ATPNAVDQTS
201: TPLASSQPAA IPDSLTTLSE YLNHLRQEFA ANGSNANNLQ DSENSVGNVQ DSASTTGESR IPRPSHLAEV LQSTRQLLIG EVADCLSNLS RQLVDHVNVT
301: DPPTRRLCQS NMLQSGSLLE SLGISLLELG RATMMLRLGQ TPDDAVVDAG PAVFISPTGR NPLPSHSSRL GTSIGSLQAG TAHSNPFAGQ SLASAPRNIE
401: IRIRTGSWVP ASGTNQREES TTQQTPGQTI PSTPSSTTDP APSTRGPSEP LRNPVALVIP VVARYQQISL GGRSSTGLDG VHQPVTESSR QPQSVGTPGR
501: EGDSSASPGG RGLSELRNRI HQFLRPLSRR ENQAGSTESQ GAANPSATAS TETNEAVANA QVEPATTTDE GNFISSVLQQ IMPFISQNVA SSSSGEAATG
601: RGSNSRQASS REAEEEEGTE RGNSTRRPEP PSPPESKRQR RE
Arabidopsis Description
Ubiquitin-like superfamily protein [Source:TAIR;Acc:AT5G25270]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.