CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01878
KRH03461
KRH41747
KRH51281
KRH56921
KRH60449
KRH75237

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19080.1	KRH01878	AT2G02560.1	21798944
AT2G19080.1	KRH51281	AT2G02560.1	21798944
AT2G19080.1	KRH75237	AT2G02560.1	21798944
AT2G19080.1	KRH41747	AT3G20000.1	17981999
AT2G19080.1	KRH60449	AT3G20000.1	17981999
AT2G19080.1	KRH03461	AT3G47640.1	21798944
AT2G19080.1	KRH56921	AT3G47640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19062	Soybean	cytosol, nucleus, plasma membrane	93.77	94.06
KRH12285	Soybean	cytosol	71.65	70.12
KRH37302	Soybean	cytosol	71.03	69.3
Solyc07g009320.2.1	Tomato	cytosol, nucleus, plastid	59.5	58.59
PGSC0003DMT400021961	Potato	cytosol	59.5	58.59
VIT_11s0103g00300.t01	Wine grape	cytosol	57.32	56.44
CDX82614	Canola	cytosol	51.09	52.23
CDY03366	Canola	cytosol, golgi, peroxisome	50.78	51.91
CDY39135	Canola	cytosol	50.78	51.75
Bra038562.1-P	Field mustard	cytosol	50.47	51.59
CDY66507	Canola	cytosol	50.16	51.27
AT2G19080.1	Thale cress	cytosol, peroxisome, plasma membrane	49.84	50.79
Bra038838.1-P	Field mustard	cytosol	35.51	49.35
GSMUA_Achr1P15670_001	Banana	cytosol	44.24	47.18
OQU75905	Sorghum	cytosol, plastid	47.66	45.4
TraesCS7B01G030900.1	Wheat	plastid	46.11	43.92
Os06t0168000-01	Rice	cytosol, peroxisome	46.73	43.35
TraesCS7A01G130600.1	Wheat	plastid	45.48	43.32
TraesCS7D01G130000.1	Wheat	plastid	44.86	41.5
HORVU7Hr1G027350.3	Barley	endoplasmic reticulum, plasma membrane	40.81	41.32
Zm00001d045193_P002	Maize	mitochondrion	47.04	40.92

Protein Annotations

EntrezGene:100786767	MapMan:23.2.2.2	EMBL:ACUP02010326	EnsemblPlantsGene:GLYMA_17G060700	GO:GO:0001401	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006626
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
InterPro:Glutathione-S-Trfase_C_sf	UniProt:I1MSN3	EnsemblPlants:KRH02821	ProteinID:KRH02821	ProteinID:KRH02821.1	InterPro:Metaxin
InterPro:Metaxin_GST	PFAM:PF17171	PFAM:PF17172	PIRSF:PIRSF038150	PANTHER:PTHR12289	PANTHER:PTHR12289:SF41
SUPFAM:SSF47616	TMHMM:TMhelix	InterPro:Thioredoxin-like_fold	UniParc:UPI000233E1F9	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:-:4628596..4631593

Molecular Weight (calculated)

35975.5 Da

IEP (calculated)

5.249

GRAVY (calculated)

-0.259

Length

321 amino acids

Sequence
(BLAST)

001: MAELNTLVVR KPCFGLPTGC TQSLSAYIYL KFAQIPFQLD FHLNNPHSNQ IPYFEVGDSV AYNNEKEGII ECLKKDVGVV DLDSGVSSLP EWISTKAILT
101: TWLADALAYE LWLGCEGSSA YSIYYSDLPW PLGKILSWKK AIWVKLKHGI TNDNAEVKKE EIYERAKSAY EALSSCLGEQ NYLFENRPSS LDAIFLAHGL
201: VVLHALPESS MLRIKFSEHA NLVRYVQQCK TELIDAAPSP SSAPQFHTDA TSSASKSHSS SKPKSKPKRE KTQEEKTFKR KAKYFVVAQL VAVVVFLTLM
301: TSFDDAEVEL DDDDGSYDYD E

Best Arabidopsis Sequence Match ( AT2G19080.1 )
(BLAST)

001: MEGDQETNVY TLVARKPSFD LPTACPNCLP AYIYLKLAQL PFELAFNSTF PDSDELPYFE SDTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLSDYLSLK
101: ALIVSWLEEA LTYEIWVGTE GISTSKIYYS DLPWVISKVL FYKQTYLAKN RLGITKENAE QREKQIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFLL
201: SHILFIIQAL PVTSVLRCKL LEHSNLVRYA EKLKSEFLEA SSSSPSPPLH SFPSSFPRKS SKPKSKPKVE KTEEEKKFKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDELEY EDEDD

Arabidopsis Description

MTX1Mitochondrial outer membrane import complex protein METAXIN [Source:UniProtKB/Swiss-Prot;Acc:O64471]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.