Factsheet for GSMUA_Achr1P15670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P07390_001
GSMUA_Achr2P11550_001
GSMUA_Achr3P20020_001
GSMUA_Achr8P01650_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19080.1	GSMUA_Achr10P...	AT2G02560.1	21798944
AT2G19080.1	GSMUA_Achr10P...	AT3G20000.1	17981999
AT2G19080.1	GSMUA_Achr10P...	AT3G20000.1	17981999
AT2G19080.1	GSMUA_Achr10P...	AT3G20000.1	17981999
AT2G19080.1	GSMUA_Achr2P11550_001	AT3G20000.1	17981999
AT2G19080.1	GSMUA_Achr8P01650_001	AT3G20000.1	17981999
AT2G19080.1	GSMUA_Achr2P07390_001	AT3G47640.1	21798944
AT2G19080.1	GSMUA_Achr3P20020_001	AT3G47640.1	21798944
AT2G19080.1	GSMUA_AchrUn_...	AT3G47640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G027350.3	Barley	endoplasmic reticulum, plasma membrane	54.82	52.05
OQU75905	Sorghum	cytosol, plastid	56.48	50.45
Os06t0168000-01	Rice	cytosol, peroxisome	56.15	48.84
VIT_11s0103g00300.t01	Wine grape	cytosol	52.49	48.47
TraesCS7A01G130600.1	Wheat	plastid	54.15	48.37
TraesCS7B01G030900.1	Wheat	plastid	53.82	48.07
Solyc07g009320.2.1	Tomato	cytosol, nucleus, plastid	51.83	47.85
PGSC0003DMT400021961	Potato	cytosol	51.49	47.55
TraesCS7D01G130000.1	Wheat	plastid	54.15	46.97
KRH12285	Soybean	cytosol	49.5	45.43
Zm00001d045193_P002	Maize	mitochondrion	55.48	45.26
KRH37302	Soybean	cytosol	49.17	44.98
KRH02821	Soybean	mitochondrion	47.18	44.24
KRH19062	Soybean	cytosol, nucleus, plasma membrane	46.51	43.75
CDY39135	Canola	cytosol	45.18	43.17
CDX82614	Canola	cytosol	44.85	42.99
CDY03366	Canola	cytosol, golgi, peroxisome	43.19	41.4
CDY66507	Canola	cytosol	42.86	41.08
Bra038562.1-P	Field mustard	cytosol	42.86	41.08
AT2G19080.1	Thale cress	cytosol, peroxisome, plasma membrane	42.86	40.95
Bra038838.1-P	Field mustard	cytosol	29.9	38.96

Protein Annotations

MapMan:23.2.2.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0005743	GO:GO:0006626	GO:GO:0006810	GO:GO:0008150	GO:GO:0009536
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	EnsemblPlantsGene:GSMUA_Achr1G15670_001	EnsemblPlants:GSMUA_Achr1P15670_001	EnsemblPlants:GSMUA_Achr1T15670_001
UniProt:M0S075	InterPro:Metaxin_GST	PFAM:PF17171	PFAM:PF17172	PANTHER:PTHR12289	PANTHER:PTHR12289:SF41
InterPro:Thioredoxin-like_fold	UniParc:UPI0002962034	SEG:seg	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G15670_001]

Coordinates

chr1:-:11734540..11745565

Molecular Weight (calculated)

34044.4 Da

IEP (calculated)

5.263

GRAVY (calculated)

-0.302

Length

301 amino acids

Sequence
(BLAST)

001: MFIYPCSELH ERAELIDLTP TILSHHIPYV EYGDYVTFNN EKGGVIECLN EDNVVKLDSQ LPKDCFPDWA STKVMISTWL AEAVQYELWV TCDNTIADDI
101: YFSDLPWPIG KILHWKQTQA VKQLHGITKL NAAEKEEEIY RKANIAYEAL SMKLGSQVFF FEGRPTSVDS LFLGHAVFVL HVLPETSVLR SSLSKHANLL
201: RFVQDCKIRL LEDSYSSATG PAFSSDASSS SIPRRKGSKQ NAKTKPKEKR ERTEEEKAFR RRAKYFIAAQ VVSIVIYLSI LGGMGDSGLE DGDEDGLTYE
301: E

Best Arabidopsis Sequence Match ( AT2G19080.1 )
(BLAST)

001: MEGDQETNVY TLVARKPSFD LPTACPNCLP AYIYLKLAQL PFELAFNSTF PDSDELPYFE SDTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLSDYLSLK
101: ALIVSWLEEA LTYEIWVGTE GISTSKIYYS DLPWVISKVL FYKQTYLAKN RLGITKENAE QREKQIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFLL
201: SHILFIIQAL PVTSVLRCKL LEHSNLVRYA EKLKSEFLEA SSSSPSPPLH SFPSSFPRKS SKPKSKPKVE KTEEEKKFKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDELEY EDEDD

Arabidopsis Description

MTX1Mitochondrial outer membrane import complex protein METAXIN [Source:UniProtKB/Swiss-Prot;Acc:O64471]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.