Factsheet for PGSC0003DMT400021961

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001617
PGSC0003DMT400051986

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19080.1	PGSC0003DMT400051986	AT3G20000.1	17981999
AT2G19080.1	PGSC0003DMT400001617	AT3G47640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g009320.2.1	Tomato	cytosol, nucleus, plastid	96.93	96.93
VIT_11s0103g00300.t01	Wine grape	cytosol	69.94	69.94
KRH02821	Soybean	mitochondrion	58.59	59.5
KRH19062	Soybean	cytosol, nucleus, plasma membrane	58.28	59.38
CDY03366	Canola	cytosol, golgi, peroxisome	55.83	57.96
CDX82614	Canola	cytosol	55.52	57.64
Bra038562.1-P	Field mustard	cytosol	55.21	57.32
CDY66507	Canola	cytosol	55.21	57.32
AT2G19080.1	Thale cress	cytosol, peroxisome, plasma membrane	55.21	57.14
Bra038838.1-P	Field mustard	cytosol	40.18	56.71
KRH37302	Soybean	cytosol	57.06	56.53
CDY39135	Canola	cytosol	54.6	56.51
KRH12285	Soybean	cytosol	55.52	55.18
OQU75905	Sorghum	cytosol, plastid	55.52	53.71
Os06t0168000-01	Rice	cytosol, peroxisome	56.44	53.18
GSMUA_Achr1P15670_001	Banana	cytosol	47.55	51.49
TraesCS7B01G030900.1	Wheat	plastid	52.45	50.74
TraesCS7A01G130600.1	Wheat	plastid	51.84	50.15
TraesCS7D01G130000.1	Wheat	plastid	52.45	49.28
Zm00001d045193_P002	Maize	mitochondrion	55.52	49.05
HORVU7Hr1G027350.3	Barley	endoplasmic reticulum, plasma membrane	47.24	48.58

Protein Annotations

EntrezGene:102592956	MapMan:23.2.2.2	GO:GO:0001401	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005743	GO:GO:0006626	GO:GO:0006810
GO:GO:0008150	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
InterPro:Glutathione-S-Trfase_C_sf	UniProt:M1AFY1	InterPro:Metaxin	InterPro:Metaxin_GST	PFAM:PF17171	PFAM:PF17172
EnsemblPlantsGene:PGSC0003DMG400008514	PGSC:PGSC0003DMG400008514	EnsemblPlants:PGSC0003DMT400021961	PIRSF:PIRSF038150	PANTHER:PTHR12289	PANTHER:PTHR12289:SF41
SUPFAM:SSF47616	TMHMM:TMhelix	InterPro:Thioredoxin-like_fold	UniParc:UPI0002961502	RefSeq:XP_006359063.1	SEG:seg

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008514]

Coordinates

chr7:-:7415137..7424704

Molecular Weight (calculated)

36742.1 Da

IEP (calculated)

4.799

GRAVY (calculated)

-0.455

Length

326 amino acids

Sequence
(BLAST)

001: MEEAKEREKL TLVTRKSCFG LPTSCPNCLP AYVYLKFSGT PFDLDFNLIN PDSDQIPYVE SGTYVAYNNE KGGVIRSLSE DGFVDLDSQV RGIPEWISAK
101: AMVDSWLADA IIYELWVGSD GTSAHKIYYS DLPWPLGKIL YLKQVHVVKQ ILGITKENAE RREEEIYRNA NDAFCALSTR LGEQAYFFDN RPTSLDAVFL
201: GHALFTLYAL PETSVLRSKL LEHDNLVRYT EKYKSELVDS SGSSSSGSQS QSDPSSSMPR RPSQWSSKPK SKPKREKTEE EKKFRRRAKY FLVTQLVAVL
301: VFLSLLGGSD AAEVELDEDD DGADYD

Best Arabidopsis Sequence Match ( AT2G19080.1 )
(BLAST)

001: MEGDQETNVY TLVARKPSFD LPTACPNCLP AYIYLKLAQL PFELAFNSTF PDSDELPYFE SDTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLSDYLSLK
101: ALIVSWLEEA LTYEIWVGTE GISTSKIYYS DLPWVISKVL FYKQTYLAKN RLGITKENAE QREKQIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFLL
201: SHILFIIQAL PVTSVLRCKL LEHSNLVRYA EKLKSEFLEA SSSSPSPPLH SFPSSFPRKS SKPKSKPKVE KTEEEKKFKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDELEY EDEDD

Arabidopsis Description

MTX1Mitochondrial outer membrane import complex protein METAXIN [Source:UniProtKB/Swiss-Prot;Acc:O64471]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.