CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 4
cytosol 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94935
EER99751
EES06334
KXG28874
KXG32258
KXG39270

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19080.1	EES06334	AT2G02560.1	21798944
AT2G19080.1	EER94935	AT3G20000.1	17981999
AT2G19080.1	KXG32258	AT3G20000.1	17981999
AT2G19080.1	EER99751	AT3G47640.1	21798944
AT2G19080.1	KXG28874	AT3G47640.1	21798944
AT2G19080.1	KXG39270	AT3G47640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045193_P002	Maize	mitochondrion	91.39	83.47
Os06t0168000-01	Rice	cytosol, peroxisome	81.6	79.48
TraesCS7B01G030900.1	Wheat	plastid	73.59	73.59
TraesCS7A01G130600.1	Wheat	plastid	73.0	73.0
TraesCS7D01G130000.1	Wheat	plastid	73.59	71.47
HORVU7Hr1G027350.3	Barley	endoplasmic reticulum, plasma membrane	61.42	65.3
GSMUA_Achr1P15670_001	Banana	cytosol	50.45	56.48
VIT_11s0103g00300.t01	Wine grape	cytosol	54.3	56.13
Solyc07g009320.2.1	Tomato	cytosol, nucleus, plastid	54.01	55.83
PGSC0003DMT400021961	Potato	cytosol	53.71	55.52
Bra038838.1-P	Field mustard	cytosol	34.42	50.22
CDX82614	Canola	cytosol	46.29	49.68
CDY39135	Canola	cytosol	46.29	49.52
Bra038562.1-P	Field mustard	cytosol	45.4	48.73
CDY03366	Canola	cytosol, golgi, peroxisome	45.4	48.73
CDY66507	Canola	cytosol	45.1	48.41
AT2G19080.1	Thale cress	cytosol, peroxisome, plasma membrane	45.1	48.25
KRH19062	Soybean	cytosol, nucleus, plasma membrane	45.7	48.12
KRH12285	Soybean	cytosol	46.59	47.87
KRH37302	Soybean	cytosol	46.59	47.72
KRH02821	Soybean	mitochondrion	45.4	47.66

Protein Annotations

MapMan:23.2.2.2	EntrezGene:8070902	UniProt:A0A1W0VRL0	GO:GO:0001401	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0005743	GO:GO:0006626
GO:GO:0006810	GO:GO:0008150	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	InterPro:Metaxin	InterPro:Metaxin_GST	EnsemblPlants:OQU75905	ProteinID:OQU75905	ProteinID:OQU75905.1
PFAM:PF17171	PFAM:PF17172	PIRSF:PIRSF038150	PANTHER:PTHR12289	PANTHER:PTHR12289:SF41	EnsemblPlantsGene:SORBI_3010G054300
TMHMM:TMhelix	InterPro:Thioredoxin-like_fold	UniParc:UPI0001A890FF	RefSeq:XP_002436560.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:4262000..4265793

Molecular Weight (calculated)

37241.0 Da

IEP (calculated)

5.265

GRAVY (calculated)

-0.223

Length

337 amino acids

Sequence
(BLAST)

001: MASAAAAAAA AEWEAAARKV LVARKPCFGL PTACPTCLPV FLYLRMAQVP FDIHVDTNFP DADHIPYVEF GDCVAFNNEK GGVIEYLKDE KIVDLNSNFP
101: SVSSTTVQET KAMVSTWLAD ALLYELWVAS DGSIANDIYF SDLAWPIGKI LHWKKTRHVK QQLGITKLNA AEKEEEIYRK ASAAYDSLSI RLGDEVFLFD
201: NSPTDVDALF LGHALFVLSV LPDTSVLRGT LQKHDNLVNF AEHHKVQLLE TSSSSSSGLG SSPSPSSSTP RRRPSADQGY KPKPRAKKER TEEEKKFRRR
301: AKYFLATQLV AVLVFLSLMG GVDSSELDDD DGLDYED

Best Arabidopsis Sequence Match ( AT2G19080.1 )
(BLAST)

001: MEGDQETNVY TLVARKPSFD LPTACPNCLP AYIYLKLAQL PFELAFNSTF PDSDELPYFE SDTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLSDYLSLK
101: ALIVSWLEEA LTYEIWVGTE GISTSKIYYS DLPWVISKVL FYKQTYLAKN RLGITKENAE QREKQIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFLL
201: SHILFIIQAL PVTSVLRCKL LEHSNLVRYA EKLKSEFLEA SSSSPSPPLH SFPSSFPRKS SKPKSKPKVE KTEEEKKFKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDELEY EDEDD

Arabidopsis Description

MTX1Mitochondrial outer membrane import complex protein METAXIN [Source:UniProtKB/Swiss-Prot;Acc:O64471]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.