CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01878
KRH03461
KRH41747
KRH51281
KRH56921
KRH60449
KRH75237

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19080.1	KRH01878	AT2G02560.1	21798944
AT2G19080.1	KRH51281	AT2G02560.1	21798944
AT2G19080.1	KRH75237	AT2G02560.1	21798944
AT2G19080.1	KRH41747	AT3G20000.1	17981999
AT2G19080.1	KRH60449	AT3G20000.1	17981999
AT2G19080.1	KRH03461	AT3G47640.1	21798944
AT2G19080.1	KRH56921	AT3G47640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02821	Soybean	mitochondrion	94.06	93.77
KRH12285	Soybean	cytosol	72.19	70.43
KRH37302	Soybean	cytosol	70.62	68.69
Solyc07g009320.2.1	Tomato	cytosol, nucleus, plastid	59.69	58.59
PGSC0003DMT400021961	Potato	cytosol	59.38	58.28
VIT_11s0103g00300.t01	Wine grape	cytosol	59.06	57.98
CDX82614	Canola	cytosol	51.56	52.55
CDY03366	Canola	cytosol, golgi, peroxisome	51.56	52.55
CDY39135	Canola	cytosol	51.56	52.38
Bra038562.1-P	Field mustard	cytosol	51.25	52.23
AT2G19080.1	Thale cress	cytosol, peroxisome, plasma membrane	51.25	52.06
CDY66507	Canola	cytosol	50.94	51.91
Bra038838.1-P	Field mustard	cytosol	36.88	51.08
GSMUA_Achr1P15670_001	Banana	cytosol	43.75	46.51
OQU75905	Sorghum	cytosol, plastid	48.12	45.7
Os06t0168000-01	Rice	cytosol, peroxisome	47.5	43.93
TraesCS7B01G030900.1	Wheat	plastid	45.94	43.62
TraesCS7A01G130600.1	Wheat	plastid	45.31	43.03
Zm00001d045193_P002	Maize	mitochondrion	47.81	41.46
TraesCS7D01G130000.1	Wheat	plastid	44.69	41.21
HORVU7Hr1G027350.3	Barley	endoplasmic reticulum, plasma membrane	39.69	40.06

Protein Annotations

EntrezGene:100807761	MapMan:23.2.2.2	EMBL:ACUP02008168	EnsemblPlantsGene:GLYMA_13G099400	GO:GO:0001401	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005741	GO:GO:0006626
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
InterPro:Glutathione-S-Trfase_C_sf	UniProt:I1LVN3	EnsemblPlants:KRH19062	ProteinID:KRH19062	ProteinID:KRH19062.1	InterPro:Metaxin
InterPro:Metaxin_GST	PFAM:PF17171	PFAM:PF17172	PIRSF:PIRSF038150	PANTHER:PTHR12289	PANTHER:PTHR12289:SF41
SUPFAM:SSF47616	TMHMM:TMhelix	InterPro:Thioredoxin-like_fold	UniParc:UPI000233BC5C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:21442358..21445246

Molecular Weight (calculated)

36000.7 Da

IEP (calculated)

6.003

GRAVY (calculated)

-0.263

Length

320 amino acids

Sequence
(BLAST)

001: MAEVNTLVVR KPCFGLPTGC PQCLSAYIYL KFAQFPFQLD FHLNNPHSDQ IPYFEVGDYV AYNNEKEGII ECLKKDVGVV DLDSGVSSLP EWISTKAILT
101: TWLADALTYE LWLGCEGSSA YSIYYPDLPW PLGKILSWKK AHWVKLKHGI TNDNAEVKKE EIYERAKSAY DALSSCLGEQ NYLFENRPSS LDAIFLAHGL
201: VVLHALPESS MLRIKFSEHA HLVRYVQQCK TEFIEAAPSP SSAPRFHTGA SSSASKSHSS SKPKSKPKRE KTQEEKTFKR KAKYFVVAQL VAVVVFLTLM
301: TSFDDAEVEL DDDGGYDFDE

Best Arabidopsis Sequence Match ( AT2G19080.1 )
(BLAST)

001: MEGDQETNVY TLVARKPSFD LPTACPNCLP AYIYLKLAQL PFELAFNSTF PDSDELPYFE SDTYVAYNNE DGGVIEKLKK DGIVNLDSQL QSLSDYLSLK
101: ALIVSWLEEA LTYEIWVGTE GISTSKIYYS DLPWVISKVL FYKQTYLAKN RLGITKENAE QREKQIYKRA SEAYEALSTR LGEQKFLFED RPSSLDAFLL
201: SHILFIIQAL PVTSVLRCKL LEHSNLVRYA EKLKSEFLEA SSSSPSPPLH SFPSSFPRKS SKPKSKPKVE KTEEEKKFKK RARFFLAAQF LAVVIYVSVM
301: GGGSSDELEY EDEDD

Arabidopsis Description

MTX1Mitochondrial outer membrane import complex protein METAXIN [Source:UniProtKB/Swiss-Prot;Acc:O64471]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.