CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94268
KRG97423
KRH02821
KRH10544
KRH12285
KRH19062
KRH31475
KRH37302
KRH43896
KRH57705
KRH58262
KRH58264

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20000.1	KRG97423	AT1G27390.1	17981999
AT3G20000.1	KRH31475	AT1G27390.1	17981999
AT3G20000.1	KRH02821	AT2G19080.1	17981999
AT3G20000.1	KRH12285	AT2G19080.1	17981999
AT3G20000.1	KRH19062	AT2G19080.1	17981999
AT3G20000.1	KRH37302	AT2G19080.1	17981999
AT3G20000.1	KRG94268	AT3G27080.1	17981999
AT3G20000.1	KRH57705	AT3G27080.1	17981999
AT3G20000.1	KRH10544	AT5G09420.1	17981999
AT3G20000.1	KRH43896	AT5G09420.1	17981999
AT3G20000.1	KRH58262	AT5G09420.1	17981999
AT3G20000.1	KRH58264	AT5G09420.1	17981999
AT3G20000.1	KRG94268	AT5G40930.1	17981999
AT3G20000.1	KRH57705	AT5G40930.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60449	Soybean	mitochondrion	96.77	97.4
VIT_03s0097g00590.t01	Wine grape	cytosol	86.13	86.41
Solyc06g007710.2.1	Tomato	plastid	81.94	80.89
Solyc06g082800.2.1	Tomato	cytosol, nucleus, peroxisome	80.65	80.13
CDX82267	Canola	cytosol	72.26	72.49
CDY33440	Canola	cytosol	72.26	72.26
AT3G20000.1	Thale cress	cytosol	71.94	72.17
CDY42223	Canola	cytosol	71.94	71.94
CDY36066	Canola	cytosol	71.61	71.84
Bra038249.1-P	Field mustard	cytosol	71.61	71.61
GSMUA_Achr8P01650_001	Banana	plastid	74.19	71.21
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome, plastid	74.52	69.16
GSMUA_Achr10P...	Banana	extracellular, vacuole	41.61	68.62
EER94935	Sorghum	cytosol, plastid	72.9	67.87
Zm00001d028971_P001	Maize	cytosol	72.9	67.66
Os03t0323800-01	Rice	cytosol, mitochondrion	72.9	67.06
Zm00001d047566_P008	Maize	cytosol	71.61	66.67
HORVU4Hr1G051720.1	Barley	cytosol	71.29	65.77
TraesCS4B01G175300.1	Wheat	cytosol	71.29	65.77
TraesCS4D01G177200.1	Wheat	cytosol, mitochondrion, unclear	70.97	65.48
TraesCS4A01G129200.1	Wheat	plastid	70.97	65.48
CDY24571	Canola	cytosol	64.84	65.05
Bra035826.1-P	Field mustard	cytosol	63.87	64.08
CDY25368	Canola	cytosol	63.87	64.08
PGSC0003DMT400051986	Potato	cytosol, plastid	14.84	63.01
AT1G50400.1	Thale cress	cytosol	62.26	62.26
GSMUA_Achr2P11550_001	Banana	cytosol, extracellular, plastid, vacuole	68.71	60.68
Zm00001d008242_P001	Maize	mitochondrion	63.55	58.28
KXG32258	Sorghum	plastid	63.23	58.16
TraesCS3D01G192000.1	Wheat	cytosol, nucleus, peroxisome	61.94	57.48
TraesCS3A01G188600.1	Wheat	cytosol	61.94	57.31
TraesCS3B01G217800.1	Wheat	cytosol, nucleus, peroxisome	61.29	56.89
GSMUA_Achr10P...	Banana	plastid	39.03	56.54
HORVU3Hr1G039040.6	Barley	mitochondrion	61.94	52.75
CDY37141	Canola	cytosol	53.23	51.56
Bra018846.1-P	Field mustard	cytosol	52.9	51.25
CDY22793	Canola	cytosol	52.58	50.94
Zm00001d040440_P001	Maize	plastid	28.39	48.09
Os01t0276200-00	Rice	mitochondrion	58.39	43.72

Protein Annotations

EntrezGene:100816352	Gene3D:2.40.160.10	MapMan:23.2.1.6	EMBL:ACUP02004778	EnsemblPlantsGene:GLYMA_08G048100	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005741	GO:GO:0005742	GO:GO:0006810	GO:GO:0008150	GO:GO:0008320	GO:GO:0009987
GO:GO:0015266	GO:GO:0016020	GO:GO:0016043	GO:GO:0030150	GO:GO:0055085	UniProt:I1KQE2
InterPro:IPR023614	EnsemblPlants:KRH41747	ProteinID:KRH41747	ProteinID:KRH41747.1	PFAM:PF01459	PANTHER:PTHR10802
PANTHER:PTHR10802:SF2	InterPro:Porin_Euk/Tom40	InterPro:Porin_dom_sf	InterPro:Tom40	UniParc:UPI0002337F57	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:3747166..3753283

Molecular Weight (calculated)

34582.6 Da

IEP (calculated)

7.926

GRAVY (calculated)

-0.252

Length

310 amino acids

Sequence
(BLAST)

001: MATLIPPPPP PPPPPAAAAD PKVDYLNLPC PIPFEELHRE AMMSLKPDLF EGMRFDFTKM LNQKFSLNHS VLMGPTEVPS QSTETIKIPT AHYEFGSTFI
101: DHPRLLLWGR ILTDGRLNAR VKCDLSENLT FKANAQLTNE PHMSHAMINF DYKGKDYRTQ FQLGNGALLG ASYIQSVTQH LSLGGEVFWA GQHRKSGIGY
201: AARYNTDKSV ATGQVASTGM VLLSYVQKVS EKVSLASEFM CNYLSRDVTA SFGYDYILRQ CRLRGKIDSN GCVAAFLEER LNMGLNFILS AELDHRKKDY
301: KFGFGLTVGE

Best Arabidopsis Sequence Match ( AT3G20000.1 )
(BLAST)

001: MADLLPPLTA AQVDAKTKVD EKVDYSNLPS PVPYEELHRE ALMSLKSDNF EGLRFDFTRA LNQKFSLSHS VMMGPTEVPA QSPETTIKIP TAHYEFGANY
101: YDPKLLLIGR VMTDGRLNAR LKADLTDKLV VKANALITNE EHMSQAMFNF DYMGSDYRAQ LQLGQSALIG ATYIQSVTNH LSLGGEIFWA GVPRKSGIGY
201: AARYETDKMV ASGQVASTGA VVMNYVQKIS DKVSLATDFM YNYFSRDVTA SVGYDYMLRQ ARVRGKIDSN GVASALLEER LSMGLNFLLS AELDHKKKDY
301: KFGFGLTVG

Arabidopsis Description

TOM40-1TOM40 [Source:UniProtKB/TrEMBL;Acc:A0A178V9B1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.