CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

plastid 2
endoplasmic reticulum 3
nucleus 1
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH32102
KRH41747
KRH60449
KRH71329
KRH71332

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09420.1	KRH41747	AT3G20000.1	17981999
AT5G09420.1	KRH60449	AT3G20000.1	17981999
AT5G09420.1	KRH32102	AT3G54660.1	17981999
AT5G09420.1	KRH71329	AT3G54660.1	17981999
AT5G09420.1	KRH71332	AT3G54660.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10544	Soybean	golgi	94.82	94.82
KRH58262	Soybean	cytosol	35.95	77.34
KRH58264	Soybean	golgi, plasma membrane	39.63	73.15
VIT_12s0028g00300.t01	Wine grape	cytosol	70.74	69.69
Solyc10g047300.1.1	Tomato	plastid	67.73	67.73
PGSC0003DMT400042984	Potato	extracellular, plasma membrane	36.45	65.47
CDY21581	Canola	cytosol	63.38	62.85
AT5G09420.1	Thale cress	cytosol	62.71	62.19
GSMUA_Achr9P14860_001	Banana	mitochondrion	60.87	58.43
TraesCS6A01G318800.1	Wheat	plastid	58.36	57.31
KXG30729	Sorghum	plastid	58.53	57.0
TraesCS6D01G298000.1	Wheat	plastid	57.86	56.81
TraesCS6B01G349000.1	Wheat	plastid	57.53	56.49
Zm00001d018098_P005	Maize	plasma membrane	57.02	55.54
Os02t0754500-01	Rice	cytosol, mitochondrion, plastid	56.86	55.46
HORVU6Hr1G078210.1	Barley	mitochondrion	48.66	52.15
KRH41841	Soybean	endoplasmic reticulum	51.0	51.61
KRH60539	Soybean	extracellular	50.33	51.28
KRG92836	Soybean	cytosol	37.12	51.27
KRH33958	Soybean	cytosol	36.79	50.81
Bra009383.1-P	Field mustard	cytosol, plastid	63.21	40.95
KRG98874	Soybean	mitochondrion	15.22	19.16
KRH59629	Soybean	golgi	19.06	18.75
KRH40976	Soybean	golgi	18.9	18.55
KRH63971	Soybean	cytosol, golgi, peroxisome	19.06	18.39
KRH53966	Soybean	cytosol, golgi, peroxisome	18.9	18.2
KRH46093	Soybean	mitochondrion	16.22	17.86
KRH10653	Soybean	cytosol	16.89	16.64
KRH21697	Soybean	cytosol	16.72	16.47
KRH41039	Soybean	mitochondrion	12.04	14.75
KRH59711	Soybean	plasma membrane	14.38	13.89

Protein Annotations

KEGG:00970+6.3.5.7	Gene3D:1.25.40.10	EntrezGene:100787123	MapMan:23.2.1.7	Gene3D:3.90.1300.10	EMBL:ACUP02004903
InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_dom	EnsemblPlantsGene:GLYMA_08G178700	GO:GO:0003674	GO:GO:0003824
GO:GO:0004040	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	UniProt:I1KUC8	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR036928
EnsemblPlants:KRH43896	ProteinID:KRH43896	ProteinID:KRH43896.1	PFAM:PF01425	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR11895	PANTHER:PTHR11895:SF92	MetaCyc:PWY-5921	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF75304
TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00023386E6	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:14310351..14317358

Molecular Weight (calculated)

65500.0 Da

IEP (calculated)

9.135

GRAVY (calculated)

-0.095

Length

598 amino acids

Sequence
(BLAST)

001: MSKMLKKVNA SNPKLWLLIG IGLAGAVVVV AETRRRRHRN LPKEDFGAFV ERIELLPIPQ PNQTQTLSAL TFAIKDIFDV KGYVTGFGNP QWKKTHGEAG
101: KTAIVITALL SDGATCVGKT VMDEFSFGIS GENKFYGTPT NPQMPSSIPG GSSSGSAVAV AARLVDFAIG TDTTGCVRIP AAFCGILGFR PSHGVISTIG
201: VLPNAQSLDT VGWFARDPSV LHRVGLVLLP LTSVELKRTR RIIFADDLFQ LSKAPSQKTA YIIGKAIENL SGYQSLQHMN LCQYIASNVP SLKGFHEKLT
301: QQQNGLSILK ALTSVMFSLQ GYEFKTNHEE WVKSVKPRLG RGVSERVNAA MNATHDNIKT LYKVRTEMRG AFQHLLKDDG ILVIPTVADY PLKLNTEKGF
401: SSEFHDRAFA LSSIASISGC CQVAIPLGCH NDCCASISLI SAHGVDKFLL NTVLDMYSTL QEQVSVAYAL PLLDTNGSME TSELLKEKGN TAFKGRLWNK
501: AVDYYTEAIN LNGTNATYYS NRAAAYLELG CFQEAEEDCN MAILHDKKNV KAYLRRGTAR EVLLCYKEAL KDFQHALVLE PQNKTASLAE KRLRKSTS

Best Arabidopsis Sequence Match ( AT5G09420.1 )
(BLAST)

001: MSNTLSLIQS NASNPKVWVV IGVTVAGIVI LAETRKRRIR ALREEDFGAF LDRFELLPFP PPPPPAAKQS LSGLTFSISD AFDVKDYITG FGCPQWKKTH
101: EAAEKTAVVV TTLLKNGATC VGKTIMDELG FGIIGENKHY GTPINPLMPD NVPGGCSSGS AVSVGAELVD FSLGIDTTGG VRVPAAFCGI LGFRPSQGTV
201: SSVGVLPNSQ SLETVGWFAS DPSVLCQVGH ALLNLSAVTH RRQRSLIFAD DLFELSDIPK QKSVQVVRKA IENLSGYKTP KHVNVGQYVA SNVPSLAEFC
301: EQSGKSQNSA STLRALSSVM LAIQRHEFKT NHEEWWQTCK SFLGPRFSND VVTALKSKNE SIKSLYRVKN EMRATIQSLL KEDGILVIPT VADPPPRLNT
401: KRNKSLNEFL DRTYALSCIA SMSGCCQVTI PLGEHGDRPI SVSLLTYYGG DKFLLDTTLD VYASLQDQAK LASNLAPVSD TNGNMEASEV MKEKGNAAYK
501: GKQWNKAVNF YTEAIKLNGA NATYYCNRAA AFLELCCFQQ AEQDCTKAML IDKKNVKAYL RRGTARESLV RYKEAAADFR HALVLEPQNK TAKVAEKRLR
601: KHI

Arabidopsis Description

OM64Outer envelope protein 64, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4KCL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.