CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10544
KRH43896
KRH58262
KRH58264

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54660.1	KRH10544	AT5G09420.1	17981999
AT3G54660.1	KRH43896	AT5G09420.1	17981999
AT3G54660.1	KRH58262	AT5G09420.1	17981999
AT3G54660.1	KRH58264	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P21540_001	Banana	cytosol	32.26	25.0
KRH71329	Soybean	plastid	77.42	17.61
KRH32102	Soybean	plastid	76.61	17.43
VIT_07s0141g00390.t01	Wine grape	plastid	72.58	16.1
CDY69892	Canola	plastid	66.94	14.77
Bra007087.1-P	Field mustard	plastid	66.94	14.74
CDX73461	Canola	plastid	66.13	14.62
Solyc09g065900.2.1	Tomato	plastid	65.32	14.54
AT3G54660.1	Thale cress	plastid	66.13	14.51
GSMUA_Achr3P29340_001	Banana	plastid	65.32	14.49
Os03t0163300-01	Rice	plastid	64.52	14.41
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	63.71	14.21
Zm00001d027769_P001	Maize	plastid	60.48	13.64
TraesCS4B01G278900.1	Wheat	plastid	60.48	13.64
TraesCS4A01G025200.1	Wheat	golgi	60.48	13.64
EER95455	Sorghum	plastid	60.48	13.64
TraesCS4D01G277400.1	Wheat	golgi	60.48	13.59
CDY13217	Canola	plastid	63.71	13.12
Os10t0415300-02	Rice	plastid	58.06	13.0
CDX76141	Canola	plastid	62.9	12.89
HORVU4Hr1G073930.1	Barley	mitochondrion, plastid	60.48	12.71
Bra014801.1-P	Field mustard	plastid	62.9	12.68
KRH08536	Soybean	cytosol	43.55	10.78
KRH70193	Soybean	cytosol, nucleus	43.55	10.78
OQU91783	Sorghum	plastid	41.94	9.79
KRH37006	Soybean	cytosol	21.77	7.96
KRH11978	Soybean	endoplasmic reticulum, nucleus	25.0	5.49
KRH50629	Soybean	mitochondrion	20.97	5.2
KRH02419	Soybean	mitochondrion	20.97	5.2
KRH02332	Soybean	endoplasmic reticulum, nucleus	23.39	5.09
KRH50756	Soybean	endoplasmic reticulum, nucleus	24.19	4.77
CDX94793	Canola	endoplasmic reticulum	5.65	4.19

Protein Annotations

Gene3D:3.30.390.30	MapMan:35.1	EMBL:ACUP02000887	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	EnsemblPlantsGene:GLYMA_02G142000	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019725	GO:GO:0045454	GO:GO:0050660
GO:GO:0055114	InterPro:IPR016156	UniProt:K7K8B5	EnsemblPlants:KRH71332	ProteinID:KRH71332	ProteinID:KRH71332.1
PFAM:PF02852	PRINTS:PR00411	PANTHER:PTHR43256	PANTHER:PTHR43256:SF4	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF55424
UniParc:UPI000295DA49	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:14666976..14667899

Molecular Weight (calculated)

13674.7 Da

IEP (calculated)

4.376

GRAVY (calculated)

0.202

Length

124 amino acids

Sequence
(BLAST)

001: MEGEALVKTL FQDNPKNLII GLHPVFNNTE TVEKVAVPSA VFSQPPIGQV GLTEEQAVQQ YGDIDIFTAN FRPLKATLSG LPDRVFMKLV VCAKTNEVLG
101: LHMCGEDAPE IVQIFVLLFF DDKL

Best Arabidopsis Sequence Match ( AT3G54660.1 )
(BLAST)

001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV

Arabidopsis Description

EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.