Factsheet for VIT_07s0141g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g00300.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54660.1	VIT_12s0028g00300.t01	AT5G09420.1	17981999

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065900.2.1	Tomato	plastid	79.79	80.07
PGSC0003DMT400019491	Potato	cytosol, extracellular, plastid	79.61	80.04
KRH71329	Soybean	plastid	77.82	79.82
KRH32102	Soybean	plastid	77.82	79.82
AT3G54660.1	Thale cress	plastid	79.96	79.11
CDX73461	Canola	plastid	78.18	77.9
CDY69892	Canola	plastid	78.0	77.58
Bra007087.1-P	Field mustard	plastid	78.0	77.44
GSMUA_Achr3P29340_001	Banana	plastid	73.88	73.88
KRH71332	Soybean	cytosol	16.1	72.58
Zm00001d027769_P001	Maize	plastid	71.02	72.18
Os03t0163300-01	Rice	plastid	71.56	72.07
EER95455	Sorghum	plastid	70.13	71.27
TraesCS4D01G277400.1	Wheat	golgi	70.3	71.2
CDY13217	Canola	plastid	76.57	71.1
TraesCS4B01G278900.1	Wheat	plastid	69.77	70.91
TraesCS4A01G025200.1	Wheat	golgi	69.59	70.73
CDX94793	Canola	endoplasmic reticulum	20.57	68.86
Bra014801.1-P	Field mustard	plastid	75.49	68.62
Os10t0415300-02	Rice	plastid	67.8	68.41
CDX76141	Canola	plastid	73.35	67.77
HORVU4Hr1G073930.1	Barley	mitochondrion, plastid	69.59	65.93
OQU91783	Sorghum	plastid	62.25	65.54
GSMUA_Achr9P21540_001	Banana	cytosol	16.99	59.38
VIT_05s0051g00870.t01	Wine grape	cytosol	47.59	53.63
VIT_05s0077g01210.t01	Wine grape	plastid	27.37	26.8
VIT_05s0020g00380.t01	Wine grape	mitochondrion	23.08	25.7
VIT_14s0060g01410.t01	Wine grape	cytosol	10.91	25.21
VIT_14s0060g01330.t01	Wine grape	plastid	25.76	24.49

Protein Annotations

KEGG:00480+1.8.1.7	MapMan:10.4.1.4	EntrezGene:100232842	wikigene:100232842	Gene3D:3.30.390.30	Gene3D:3.50.50.60
ProteinID:AAB70837	ProteinID:AAB70837.1	EMBL:AF019907	EMBL:AM472214	ProteinID:CAN66042	ProteinID:CAN66042.1
ProteinID:CBI17937	ProteinID:CBI17937.3	UniProt:D7SQK6	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
EMBL:FN594965	GO:GO:0000166	GO:GO:0000305	GO:GO:0003674	GO:GO:0003824	GO:GO:0004362
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006091	GO:GO:0006749	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016491	GO:GO:0016668	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	GO:GO:0098869
EntrezGene:GOR	wikigene:GOR	InterPro:Glut-diS_reduct	InterPro:IPR016156	InterPro:IPR036188	PFAM:PF02852
PFAM:PF07992	PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR43256
PANTHER:PTHR43256:SF4	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424
TIGR:TC52170	TIGRFAMs:TIGR01424	UniParc:UPI00019837BD	ArrayExpress:VIT_07s0141g00390	EnsemblPlantsGene:VIT_07s0141g00390	EnsemblPlants:VIT_07s0141g00390.t01
unigene:Vvi.118	RefSeq:XP_002281935	RefSeq:XP_002281935.1	RefSeq:XP_003632299	RefSeq:XP_003632299.1	SEG:seg

Description

No Description!

Coordinates

chr7:-:228931..236292

Molecular Weight (calculated)

60055.9 Da

IEP (calculated)

8.555

GRAVY (calculated)

-0.127

Length

559 amino acids

Sequence
(BLAST)

001: MAAATSLSTP RLTFSSPKLQ TLYRNFPISL SLNFSSSLSH SKTLTLAPGS LSQRTSSFSP RRCFAVRAES ENGAEPRHYD FDLFTIGAGS GGVRASRFAA
101: NFGSSVAVCE LPFATISSET TGGVGGTCVL RGCVPKKLLV YASKFSHEFD ESGGFGWKFE AEPKHDWSTL MANKNAELQR LTGIYKNILK NAGVTLIEGR
201: GKIVDPHTVD VDGKLYTARH ILIAVGGRPF IPEIPGSEHA IDSDVALDLP SKPKKIGIVG GGYIALEFAG IFNGLNTDVH VFIRQKKVLR GFDEDVRDFV
301: AEQMSLRGIE FHTEESPQAI LKSADGSLSL KTNKGTVEGF SHIMFATGRR PNTKNLGLET VGVKMTKTGA IEVDEFSRTS VPSIWAVGDV TDRINLTPVA
401: LMEGGALAKT LFGNEPTKPD YRAVPSAVFS QPPIGQVGLT EEQAIQKYGD IDVYTANFRP LKATLSGLPD RVFMKLIVCA KTNKVLGLHM CGEDSPEIVQ
501: GFAVAVRAGL TKADFDATVG IHPTAAEELV TMRTPTRKIR NSSPPEGKTD PEVKAAAGV

Best Arabidopsis Sequence Match ( AT3G54660.1 )
(BLAST)

001: MASTPKLTST ISSSSPSLQF LCKKLPIAIH LPSSSSSSFL SLPKTLTSLY SLRPRIALLS NHRYYHSRRF SVCASTDNGA ESDRHYDFDL FTIGAGSGGV
101: RASRFATSFG ASAAVCELPF STISSDTAGG VGGTCVLRGC VPKKLLVYAS KYSHEFEDSH GFGWKYETEP SHDWTTLIAN KNAELQRLTG IYKNILSKAN
201: VKLIEGRGKV IDPHTVDVDG KIYTTRNILI AVGGRPFIPD IPGKEFAIDS DAALDLPSKP KKIAIVGGGY IALEFAGIFN GLNCEVHVFI RQKKVLRGFD
301: EDVRDFVGEQ MSLRGIEFHT EESPEAIIKA GDGSFSLKTS KGTVEGFSHV MFATGRKPNT KNLGLENVGV KMAKNGAIEV DEYSQTSVPS IWAVGDVTDR
401: INLTPVALME GGALAKTLFQ NEPTKPDYRA VPCAVFSQPP IGTVGLTEEQ AIEQYGDVDV YTSNFRPLKA TLSGLPDRVF MKLIVCANTN KVLGVHMCGE
501: DSPEIIQGFG VAVKAGLTKA DFDATVGVHP TAAEEFVTMR APTRKFRKDS SEGKASPEAK TAAGV

Arabidopsis Description

EMB2360At3g54660 [Source:UniProtKB/TrEMBL;Acc:Q5FV38]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.