Factsheet for VIT_14s0060g01410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g01330.t01	Wine grape	plastid	95.04	39.12
VIT_05s0077g01210.t01	Wine grape	plastid	78.51	33.27
CDY34436	Canola	plastid	72.31	31.93
CDY32221	Canola	plastid	72.31	31.88
Solyc01g100360.2.1	Tomato	plastid	73.55	31.23
PGSC0003DMT400007182	Potato	extracellular	73.55	31.23
Bra033540.1-P	Field mustard	plastid	72.31	31.08
AT4G16155.1	Thale cress	plastid	71.07	30.34
CDX75895	Canola	plastid	73.14	28.69
CDX82387	Canola	plastid	73.14	28.64
Bra001645.1-P	Field mustard	plastid	73.14	28.64
AT3G16950.2	Thale cress	plastid	72.31	28.09
CDX90541	Canola	extracellular, nucleus, peroxisome	23.14	26.92
Bra012738.1-P	Field mustard	peroxisome	23.14	26.92
CDY09711	Canola	plasma membrane	31.41	20.05
VIT_05s0020g00380.t01	Wine grape	mitochondrion	26.86	12.95
VIT_07s0141g00390.t01	Wine grape	plastid	25.21	10.91
VIT_05s0051g00870.t01	Wine grape	cytosol	21.49	10.48
CDX93023	Canola	cytosol, mitochondrion	2.07	7.35

Protein Annotations

EntrezGene:100247762	Gene3D:3.50.50.60	MapMan:35.1	ProteinID:CCB61904	ProteinID:CCB61904.1	UniProt:F6I4R7
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	EMBL:FN596746	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016668	GO:GO:0050660
GO:GO:0055114	InterPro:IPR036188	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00411	PANTHER:PTHR22912
PANTHER:PTHR22912:SF196	SUPFAM:SSF51905	UniParc:UPI0002108BB5	ArrayExpress:VIT_14s0060g01410	EnsemblPlantsGene:VIT_14s0060g01410	EnsemblPlants:VIT_14s0060g01410.t01
RefSeq:XP_010659689.1	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:1109202..1113913

Molecular Weight (calculated)

25951.3 Da

IEP (calculated)

8.808

GRAVY (calculated)

-0.012

Length

242 amino acids

Sequence
(BLAST)

001: MRELQDEHHM KAFGLQVAAA GYDRQGVADH ANNLASKIRS NLTNSLKGLG VVILEGVGTI LGPQKVKYGK VGSSGNVITA KDIIIATGSV PFVPKGVEVD
101: GKTVITSDQA LKLEFIPDWI AIVGSGYIGL EFSDVYMALG SEPQAREKAE KEGFEVSVAK TSFKANTKAL AENEGAGLAK DIEFAVHAHP TLSEVLDKLF
201: KSAKVGRTGF FGPEMKSSPI LHWLKSTSLV QVWHLLLSKF ST

Best Arabidopsis Sequence Match ( AT3G16950.1 )
(BLAST)

001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTVSEKVVV

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.