Factsheet for VIT_14s0060g01330.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g01410.t01	Wine grape	cytosol	39.12	95.04
VIT_05s0077g01210.t01	Wine grape	plastid	80.61	83.01
CDY34436	Canola	plastid	74.49	79.93
CDY32221	Canola	plastid	74.32	79.6
Solyc01g100360.2.1	Tomato	plastid	77.04	79.47
PGSC0003DMT400007182	Potato	extracellular	77.04	79.47
Bra033540.1-P	Field mustard	plastid	75.51	78.86
AT4G16155.1	Thale cress	plastid	75.17	77.95
CDX75895	Canola	plastid	75.68	72.12
CDX82387	Canola	plastid	75.68	72.01
Bra001645.1-P	Field mustard	plastid	75.68	72.01
AT3G16950.2	Thale cress	plastid	75.17	70.95
CDX90541	Canola	extracellular, nucleus, peroxisome	22.45	63.46
Bra012738.1-P	Field mustard	peroxisome	22.45	63.46
CDY09711	Canola	plasma membrane	40.31	62.53
VIT_05s0020g00380.t01	Wine grape	mitochondrion	29.42	34.46
VIT_05s0051g00870.t01	Wine grape	cytosol	23.13	27.42
VIT_07s0141g00390.t01	Wine grape	plastid	24.49	25.76
CDX93023	Canola	cytosol, mitochondrion	2.21	19.12

Protein Annotations

EntrezGene:100251123	wikigene:100251123	Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	ProteinID:CBI39582
ProteinID:CBI39582.3	UniProt:D7UA18	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	EMBL:FN596746
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491
GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114
InterPro:IPR016156	InterPro:IPR036188	EntrezGene:LOC100251123	wikigene:LOC100251123	PFAM:PF02852	PFAM:PF07992
PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196
InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	UniParc:UPI0001BE4C2D
ArrayExpress:VIT_14s0060g01330	EnsemblPlantsGene:VIT_14s0060g01330	EnsemblPlants:VIT_14s0060g01330.t01	RefSeq:XP_002278080	RefSeq:XP_002278080.1	RefSeq:XP_010659695.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:1050502..1057191

Molecular Weight (calculated)

62372.1 Da

IEP (calculated)

6.934

GRAVY (calculated)

0.040

Length

588 amino acids

Sequence
(BLAST)

001: MSSLSLRISS SVAATARSES DHRLRLLSSS SPTVATSPAL HFCGLRTEAL KLGANSNRWK VVSAAVAPQN GSASDEFDYN LVIIGAGVGG HGAALHAVEK
101: GWKTAIIEGD VVGGTCVNRG CVPSKALLAV SGRMRDLQDE HHMKAFGLQV AAAGYDRQGV ADHANNLASK IRSNLTNSLK GLGVDILEGV GTILGPQKVK
201: YGKVGSSGNV ITAKDIIIAT GSVSFVPKGV EVDGKTVITS DQALKLEFVP DWIAIVGSGY IGLEFSDVYT ALGSEVTFVE ALDQLMPGFD PEIGKLARRV
301: LINPRKIDYY TGVFASKITP AKDGKPVMID LIDAKTKEPK DTLEVDAALI ATGRAPFTKG LGLENIRVET QCGFVPVDEH MQVIDADGKL VPHLYCIGDA
401: NGKMMLAHAA SAQGISVVEQ ISGKDNVLNH LSIPAACFTH PEISMVGLTE PQAREKAEKE GFEVSVAKTG FKANTKVLAE NEGEGLAKLI YRPDNGEILG
501: VHIFGLHAAD LIHEASNAIA LGTRIQDIKF AVHAHPTLSE VLDELFKSAK VGRTGSLGPE MKSSPILHWL KSTSLVQVWH LLLSKFST

Best Arabidopsis Sequence Match ( AT4G16155.1 )
(BLAST)

001: MQSVLSLSFS QASLPLANRT LCSSNAAPST PRNLRFCGLR REAFCFSPSK QLTSCRFHIQ SRRIEVSAAA SSSAGNGAPS KSFDYDLIII GAGVGGHGAA
101: LHAVEKGLKT AIIEGDVVGG TCVNRGCVPS KALLAVSGRM RELQNEHHMK AFGLQVSAAG YDRQGVADHA SNLATKIRNN LTNSMKALGV DILTGFGAVL
201: GPQKVKYGDN IITGKDIIIA TGSVPFVPKG IEVDGKTVIT SDHALKLESV PDWIAIVGSG YIGLEFSDVY TALGSEVTFI EALDQLMPGF DPEISKLAQR
301: VLINTRKIDY HTGVFASKIT PAKDGKPVLI ELIDAKTKEP KDTLEVDAAL IATGRAPFTN GLGLENINVT TQRGFIPVDE RMRVIDGNGK LVPHLYCIGD
401: ANGKLMLAHA ASAQGISVVE QVTGRDHVLN HLSIPAACFT HPEISMVGLT EPQAREKAEK EGFKVSIAKT SFKANTKALA ENEGEGLAKM IYRPDNGEIL
501: GVHIFGLHAA DLIHEASNAI ALGTRIQDIK LAVHAHPTLS EVVDELFKAA KVDSPASVTA QSVKVTV

Arabidopsis Description

LPD2Dihydrolipoyl dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JLP5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.