CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32221	Canola	plastid	96.72	96.54
AT4G16155.1	Thale cress	plastid	94.89	91.71
PGSC0003DMT400069988	Potato	cytosol	25.91	84.02
Os05t0156700-01	Rice	plastid	35.4	83.26
VIT_05s0077g01210.t01	Wine grape	plastid	85.58	82.14
PGSC0003DMT400007182	Potato	extracellular	85.22	81.93
Solyc01g100360.2.1	Tomato	plastid	85.04	81.75
CDX75895	Canola	plastid	91.42	81.2
CDX82387	Canola	plastid	91.24	80.91
KRH02332	Soybean	endoplasmic reticulum, nucleus	83.76	80.53
KRH11978	Soybean	endoplasmic reticulum, nucleus	82.66	80.18
Os01t0337900-01	Rice	plastid	79.74	77.9
EES19070	Sorghum	plastid	79.38	77.4
KXG32441	Sorghum	plastid	79.01	77.18
PGSC0003DMT400069799	Potato	mitochondrion, plastid	79.93	76.84
Solyc05g053100.2.1	Tomato	nucleus	79.38	76.18
TraesCS1A01G099500.2	Wheat	plastid	78.65	75.88
KRH37006	Soybean	cytosol	46.9	75.81
VIT_14s0060g01330.t01	Wine grape	plastid	79.93	74.49
GSMUA_Achr3P12660_001	Banana	plastid	76.82	74.25
Zm00001d009779_P002	Maize	plastid	79.2	74.19
KRH50756	Soybean	endoplasmic reticulum, nucleus	84.67	73.77
TraesCS1B01G124900.1	Wheat	plastid	79.01	73.51
TraesCS1D01G107400.1	Wheat	plastid	78.83	73.34
HORVU1Hr1G023060.8	Barley	plastid	77.92	73.24
VIT_14s0060g01410.t01	Wine grape	cytosol	31.93	72.31
CDX90541	Canola	extracellular, nucleus, peroxisome	26.82	70.67
Zm00001d009212_P004	Maize	extracellular	78.83	70.36
CDY09711	Canola	plasma membrane	47.99	69.39
GSMUA_Achr1P18490_001	Banana	plastid	32.12	61.97
CDX95864	Canola	mitochondrion	31.02	33.6
CDX92121	Canola	mitochondrion	30.84	33.53
CDX93639	Canola	mitochondrion	31.02	33.53
CDY20935	Canola	mitochondrion	30.84	33.33
CDX94793	Canola	endoplasmic reticulum	9.12	29.94
CDY69892	Canola	plastid	27.92	27.22
CDX73461	Canola	plastid	27.74	27.09
CDX77463	Canola	cytosol	22.63	25.51
CDX85155	Canola	cytosol	22.45	25.41
CDX92998	Canola	cytosol	22.08	25.0
CDY13217	Canola	plastid	27.37	24.92
CDX76141	Canola	plastid	27.01	24.46
CDX94838	Canola	cytosol	22.63	23.44
CDX93023	Canola	cytosol, mitochondrion	2.55	20.59

Protein Annotations

KEGG:00010+1.8.1.4	KEGG:00020+1.8.1.4	KEGG:00260+1.8.1.4	KEGG:00280+1.8.1.4	KEGG:00620+1.8.1.4	KEGG:00640+1.8.1.4
Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	GO:A0A078H9K8	UniProt:A0A078H9K8	EnsemblPlants:CDY34436
ProteinID:CDY34436	ProteinID:CDY34436.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004148	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491
GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00056523001	InterPro:IPR016156	InterPro:IPR036188	InterPro:Lipoamide_DH	PFAM:PF02852	PFAM:PF07992
PIRSF:PIRSF000350	PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196
MetaCyc:PWY-5046	MetaCyc:PWY-5084	InterPro:Pyr_OxRdtase_I_AS	InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905
SUPFAM:SSF55424	TIGRFAMs:TIGR01350	UniParc:UPI0004EF0CF1	SEG:seg	:	:

Description

BnaC01g21970DDihydrolipoyl dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078H9K8]

Coordinates

chrLK032334:-:125187..128517

Molecular Weight (calculated)

58313.2 Da

IEP (calculated)

7.692

GRAVY (calculated)

-0.050

Length

548 amino acids

Sequence
(BLAST)

001: MQSAFSLSFS QSSLTLPNRP LCSSNASPRN LRREAFGFSP SKQLTSCRFQ VKSGNGAPSN KSFDYDLVII GAGVGGHGAA LHAVEKGLKT AIIEGDVVGG
101: TCVNRGCVPS KALLAVSGRM RELQNEHHMK SFGLQVSAAG YDRQGVADHA NNLATKIRNN LTNSMKALGV DILTGFGSVL GPQKVKYGKD NIITAKDIII
201: ATGSVPFVPK GIEVDGKTVI TSDHALKLES VPDWIAIVGS GYIGLEFSDV YTALGSEVTF IEALDQLMPG FDPEISKLAQ RVLINPRKID YHTGVFASKI
301: TPAKDGRPVM IELIDAKTKE PKDTLEVDAA LIATGRAPFT NGLGLENINV ATQRGFIPVD ERMRVIDGNG KLVPNLYCIG DANGKLMLAH AASAQGISVV
401: EQVTGRDHVL NHLTIPAACF THPEISMVGL TEPQAREKAE KEGFKVSIAK TSFKANTKAL AENEGEGLAK MIYRPDNGEI LGVHIFGLHA ADLIHEASNA
501: IALGTRIQDI KLAVHAHPTL SEVVDELFKA AKVESPASTT PQSVKATV

Best Arabidopsis Sequence Match ( AT4G16155.1 )
(BLAST)

001: MQSVLSLSFS QASLPLANRT LCSSNAAPST PRNLRFCGLR REAFCFSPSK QLTSCRFHIQ SRRIEVSAAA SSSAGNGAPS KSFDYDLIII GAGVGGHGAA
101: LHAVEKGLKT AIIEGDVVGG TCVNRGCVPS KALLAVSGRM RELQNEHHMK AFGLQVSAAG YDRQGVADHA SNLATKIRNN LTNSMKALGV DILTGFGAVL
201: GPQKVKYGDN IITGKDIIIA TGSVPFVPKG IEVDGKTVIT SDHALKLESV PDWIAIVGSG YIGLEFSDVY TALGSEVTFI EALDQLMPGF DPEISKLAQR
301: VLINTRKIDY HTGVFASKIT PAKDGKPVLI ELIDAKTKEP KDTLEVDAAL IATGRAPFTN GLGLENINVT TQRGFIPVDE RMRVIDGNGK LVPHLYCIGD
401: ANGKLMLAHA ASAQGISVVE QVTGRDHVLN HLSIPAACFT HPEISMVGLT EPQAREKAEK EGFKVSIAKT SFKANTKALA ENEGEGLAKM IYRPDNGEIL
501: GVHIFGLHAA DLIHEASNAI ALGTRIQDIK LAVHAHPTLS EVVDELFKAA KVDSPASVTA QSVKVTV

Arabidopsis Description

LPD2Dihydrolipoyl dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JLP5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.