Factsheet for Solyc05g053100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069799	Potato	mitochondrion, plastid	96.15	96.32
PGSC0003DMT400069988	Potato	cytosol	26.97	91.12
Os05t0156700-01	Rice	plastid	35.2	86.27
VIT_05s0077g01210.t01	Wine grape	plastid	83.01	83.01
CDY32221	Canola	plastid	76.88	79.96
KRH11978	Soybean	endoplasmic reticulum, nucleus	78.98	79.82
CDY34436	Canola	plastid	76.18	79.38
Solyc01g100360.2.1	Tomato	plastid	78.98	79.12
KRH02332	Soybean	endoplasmic reticulum, nucleus	78.98	79.12
Bra033540.1-P	Field mustard	plastid	77.76	78.86
KXG32441	Sorghum	plastid	76.88	78.25
AT4G16155.1	Thale cress	plastid	77.41	77.95
Os01t0337900-01	Rice	plastid	76.53	77.9
GSMUA_Achr3P12660_001	Banana	plastid	77.23	77.78
EES19070	Sorghum	plastid	75.66	76.87
KRH37006	Soybean	cytosol	45.36	76.4
TraesCS1A01G099500.2	Wheat	plastid	74.78	75.18
Zm00001d009779_P002	Maize	plastid	75.83	74.02
TraesCS1B01G124900.1	Wheat	plastid	74.96	72.67
TraesCS1D01G107400.1	Wheat	plastid	74.78	72.5
HORVU1Hr1G023060.8	Barley	plastid	73.91	72.38
KRH50756	Soybean	endoplasmic reticulum, nucleus	79.68	72.34
CDX82387	Canola	plastid	76.88	71.04
CDX75895	Canola	plastid	76.71	70.99
Bra001645.1-P	Field mustard	plastid	76.71	70.87
Zm00001d009212_P004	Maize	extracellular	76.18	70.85
AT3G16950.2	Thale cress	plastid	77.06	70.63
GSMUA_Achr1P18490_001	Banana	plastid	33.8	67.96
CDY09711	Canola	plasma membrane	42.73	64.38
Bra012738.1-P	Field mustard	peroxisome	22.77	62.5
CDX90541	Canola	extracellular, nucleus, peroxisome	22.59	62.02
Solyc05g053300.2.1	Tomato	extracellular, mitochondrion, nucleus, plastid, unclear	30.82	35.2
Solyc12g099100.1.1	Tomato	plastid	30.3	34.33
Solyc09g065900.2.1	Tomato	plastid	26.62	27.29
Solyc09g091840.2.1	Tomato	extracellular	21.37	26.87
CDX93023	Canola	cytosol, mitochondrion	2.28	19.12

Protein Annotations

Gene3D:3.30.390.30	Gene3D:3.50.50.60	MapMan:5.1.2.2.3	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491
GO:GO:0016668	GO:GO:0019725	GO:GO:0022900	GO:GO:0045454	GO:GO:0050660	GO:GO:0055114
InterPro:IPR016156	InterPro:IPR036188	UniProt:K4C1Z0	PFAM:PF02852	PFAM:PF07992	PIRSF:PIRSF000350
PRINTS:PR00368	PRINTS:PR00411	ScanProsite:PS00076	PANTHER:PTHR22912	PANTHER:PTHR22912:SF196	InterPro:Pyr_OxRdtase_I_AS
InterPro:Pyr_nuc-diS_OxRdtase	InterPro:Pyr_nucl-diS_OxRdtase_dimer	SUPFAM:SSF51905	SUPFAM:SSF55424	EnsemblPlantsGene:Solyc05g053100.2	EnsemblPlants:Solyc05g053100.2.1
UniParc:UPI00027660F3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:63216915..63224531

Molecular Weight (calculated)

61286.9 Da

IEP (calculated)

7.066

GRAVY (calculated)

0.029

Length

571 amino acids

Sequence
(BLAST)

001: MYFSSVLSPS NCSLVKRSHQ NQLEKLSFTP LKNLRFCGLR NEILAFEFLK LNRCETQRVC NFRRSKIVVS ASVAENGSAP TSFDYDLVII GAGVGGHGAA
101: LHAVEKGLKT AIIEGDVIGG TCVNRGCVPS KALLAVSGRM RELKNEHHLK ALGIQVSGAG YDRQAVADHA NNLASKIRNN LTNSLKALGV DILTGVGTIT
201: GPQRVKYGKV GFSGSEVTAR DIIIATGSVP FVPRGIEVDG KTVITSDHAL KLEFVPEWIA IVGSGYIGLE FSDVYTALGS EVTFIEALDQ LMPGFDPEIS
301: KLAQRILVNP RKIDYHTGVF ATKITPAKDG RPVVIELTDA KTKEVKDTLE VDAALIATGR APFTNGLGLE NINVLTQRGF IPVDERMRVV DADGNLVPHL
401: YCIGDANGKM MLAHAASAQG ISVVEQVSGR DHVLNHLSIP AACFTHPEIS MVGLTEPQAR EKAEKEGFEI SIAKTSFKAN TKALAENEGE GLAKLIYRPD
501: NGEILGVHIF GMHAADLIHE ASNAIALGTS VQDIKFAVHA HPTLSEVLDE LFKSAKVTSH VHRPLGESVV V

Best Arabidopsis Sequence Match ( AT3G16950.1 )
(BLAST)

001: MQSAMALSFS QTSFTRPNHV LGSSGSVFST PRSLRFCGLR REAFGFSTSN QLAIRSNRIQ FLSRKSFQVS ASASSNGNGA PPKSFDYDLI IIGAGVGGHG
101: AALHAVEKGL KTAIIEGDVV GGTCVNRGCV PSKALLAVSG RMRELQNEHH MKSFGLQVSA AGYDRQGVAD HANNLATKIR NNLTNSMKAI GVDILTGFGS
201: VLGPQKVKYG KDNIITAKDI IIATGSVPFV PKGIEVDGKT VITSDHALKL ESVPEWIAIV GSGYIGLEFS DVYTALGSEV TFIEALDQLM PGFDPEISKL
301: AQRVLINPRK IDYHTGVFAS KITPARDGKP VLIELIDAKT KEPKDTLEVD AALIATGRAP FTNGLGLENV NVVTQRGFIP VDERMRVIDG KGTLVPNLYC
401: IGDANGKLML AHAASAQGIS VVEQVSGRDH VLNHLSIPAA CFTHPEISMV GLTEPQAKEK GEKEGFKVSV VKTSFKANTK ALAENEGEGI AKMIYRPDNG
501: EILGVHIFGL HAADLIHEAS NAIALGTRIQ DIKLAVHAHP TLSEVLDELF KAAKVESHAT TRTVSEKVVV

Arabidopsis Description

LPD1Dihydrolipoyl dehydrogenase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MS68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.